Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 118 9e-22 seq3 113 4e-20 >seq1 Length=4606855 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || ||| |||| || || || || | | Sbjct 1904039 ATGCAGATTTTCGTGAAGACGCTTACTGGCAAGACGATCACGCTGGAGGTCGAGTCTTCT 1904098 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | || || ||||| ||||||||||| || ||||| || || Sbjct 1904099 GATACCATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 1904158 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || ||||| ||| | |||||| || || |||| ||||||||| Sbjct 1904159 CAACGTCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACTCTCTCGGATTACAAC 1904218 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || || | || | || ||||| |||| |||||| Sbjct 1904219 ATCCAAAAGGAGTCGACACTTCACCTTGTCTTGCGTCTGCGGGGAGGT 1904266 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || || || || || ||||||| || || || | | Sbjct 1903761 ATGCAAATTTTCGTGAAGACGTTGACAGGAAAGACTATCACTCTCGAGGTCGAGTCTTCG 1903820 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || ||| || ||||||||||| || || || || ||||| Sbjct 1903821 GACACGATCGACAACGTTAAGGCAAAGATCCAAGACAAGGAAGGGATCCCTCCTGATCAG 1903880 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| || || ||| | |||||| ||||| | |||||||| ||| Sbjct 1903881 CAGCGCCTCATTTTTGCTGGGAAGCAGCTTGAGGATGGTCGCACGTTGTCCGATTATAAC 1903940 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 1903941 ATCCAGAAGGA 1903951 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || ||| |||| || || || || || | Sbjct 1904267 ATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTGGAGGTCGAGTCCTCG 1904326 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| ||||||||||||||||| || || || Sbjct 1904327 GACACGATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCGCCTGACCAG 1904386 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||||| ||||| |||||| |||| || |||||| Sbjct 1904387 CAGCGCCTCATCTTCGCGGGGAAGCAGTTGGAGGACGGCCGCACGCTCTCTGACTACAAC 1904446 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 1904447 ATCCAGAAGGA 1904457 >seq3 Length=3223173 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||| || || |||| || ||||| || || || Sbjct 2802473 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCCTCC 2802414 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || || ||||| |||||||| || || ||||| || Sbjct 2802413 GACACCATCGACAACGTGAAGGCGAAGATCCAAGATAAGGAGGGCATCCCGCCCGACCAG 2802354 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || ||||| || ||| | ||||| ||| || | ||||| |||||| Sbjct 2802353 CAGCGTCTTATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGTACTCTTTCCGACTACAAC 2802294 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || ||||| Sbjct 2802293 ATTCAGAAGGAGTCCAC 2802277 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || ||| ||||||| || ||||| | || Sbjct 2802192 ATGCAAATCTTCGTAAAGACGCTGACGGGCAAGACGATCACTCTCGAGGTGGAGTCTTCC 2802133 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || || |||||||| || || || || || Sbjct 2802132 GACACCATCGACAATGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAG 2802073 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| ||||| ||||| ||||| |||||| | || || |||||| Sbjct 2802072 CAGCGCTTGATCTTTGCGGGCAAGCAGTTGGAGGACGGTCGCACCCTGTCTGACTACAAC 2802013 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 2802012 ATTCAGAAGGA 2802002 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||||||||| || || || || ||||| || || |||||||| Sbjct 2801825 AAGATCCAGGACAAGGAGGGTATTCCGCCAGACCAGCAGCGTCTCATCTTCGCCGGCAAG 2801766 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGA 22409 ||| | |||||| ||||| |||| || |||||||| || || || Sbjct 2801765 CAGCTCGAGGATGGGCGCACGCTCTCGGACTACAACATCCAGAAGGA 2801719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727201992140