Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq14 120 6e-22 seq2 98.7 2e-15 seq4 96.9 7e-15 >seq14 Length=1217892 Score = 120 bits (132), Expect = 6e-22 Identities = 145/196 (74%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 279689 TCTGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCAT 279748 ||||| | | || || || || |||||||||||||||||||| || ||| | |||||||| Sbjct 665704 TCTGCGATT-GGCTCCCTCTCCGGTGGTTGGAAGATGAAGCTCGCGCTCGCCCGCGCCAT 665762 Query 279749 TCTACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAA 279808 || | || || || |||| ||||| |||||||| || |||||| ||||| | ||| Sbjct 665763 GCTCTTCCGCGCGGACATCCTCCTGCTCGATGAGCCGACTAACCACTTGGACGTCGTCAA 665822 Query 279809 CGTAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTC 279868 | | || ||||| | | |||||| ||||| || | | | ||| |||| ||||| Sbjct 665823 CATCGCGTGGCTCGAGAACTACCTGACCAGCCTCACCACCTGCACGTCCATCATCGTCTC 665882 Query 279869 TCACGACTCTGGCTTC 279884 |||||||| |||||| Sbjct 665883 GCACGACTCCGGCTTC 665898 Score = 95.1 bits (104), Expect = 2e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| ||||| |||| | ||||||||||| || |||| |||||| ||||| ||| Sbjct 665306 GGCGAGGACCTGTGCAACTGCCAGTTCTCGCTCGCCTACGGTGCGAAGATCCTGCTCAAC 665365 Query 279405 TCTAC-CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGC 279463 || | ||| || | ||||||||||| |||| || |||||| ||||| ||| || | Sbjct 665366 ACTGCTTCGCTTC-GCCTCAAGCGTGGCCACCGCTACGGTCTCTGCGGTCGCAACGGTAC 665424 Query 279464 GGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGG 279499 || ||| ||| || ||||| || || | ||||| Sbjct 665425 CGGAAAGTCCACCCTCATGCGTGCGATCACCAACGG 665460 Score = 89.7 bits (98), Expect = 1e-12 Identities = 134/188 (71%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| | || ||||| ||| | || ||||| || || |||| |||| | |||||| | Sbjct 666190 GTCCTCGGTCCCAACGGTTCCGGCAAGTCCACGCTCGTCAAGCTCCTTATTGGCGACATG 666249 Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || | | |||| || | |||||||| |||||| || || | ||||||||| Sbjct 666250 GAGCCGAACAAGGGCGGTGAGACGTGGAAGCACCCCAACTTGGTCATCGGTTACGTCGCG 666309 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 |||||||| ||||||||||| || |||||||| |||| ||| || | | ||||| | Sbjct 666310 CAGCACGCCTTCCACCACATTGACAACCACCTCGACAAGACCCCGCTCGACTACATGCTC 666369 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 666370 TGGCGTTA 666377 >seq2 Length=3722621 Score = 98.7 bits (108), Expect = 2e-15 Identities = 350/540 (65%), Gaps = 13/540 (2%) Strand=Plus/Plus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||| |||||||||||| ||||| |||||| || | | || || ||||||| || Sbjct 2460755 GTGCATACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAAAGTGAGACCGGGCATCAAGCC 2460814 Query 251904 ACGGTTCCTGAGCCAGAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACAC 251962 || ||| ||||||||||||| | ||| ||||| |||||||| | | |||||||||| Sbjct 2460815 GCGCTTCTTGAGCCAGAAGATAGACGC-GAAGGAACCAGAGAAGAAGATACCCTCGACAG 2460873 Query 251963 ACACCCATGCAACAAGGCGCTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTG 252019 | | || |||||||| || || || || || | | || | | | | Sbjct 2460874 CAGCGAAGGCGACAAGGCGTTCCGCGAAAGCGGAATTCTTGTCAGAGATCCAGCGGAGGG 2460933 Query 252020 CCCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCC 252079 |||| | |||||||| | ||||| || ||||| || |||||||| | | | Sbjct 2460934 CCCAGTCGGCCTTCTTCTTGATGCAAGGGATCGTCTCGATGGCGTCAAAGAGGTACTCAC 2460993 Query 252080 GCTCGGCAT--CGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGAT 252137 ||| || | ||||| |||| | ||| | ||||| ||||| |||| |||||||| Sbjct 2460994 GCT--GCCTGGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTAGGTCTCGGAATGGAT 2461051 Query 252138 GGATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGT 252197 | || | | || ||| | | ||||| || || | | | ||| || | Sbjct 2461052 GTTCTCCATCATGATTTGGAAGCCGTAGAAACAGCGGGCCTCGGCGGCCTGGACCTCGTT 2461111 Query 252198 GGAAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAG 252257 ||| || | ||| |||||| | || ||||| || | | || |||||| |||| Sbjct 2461112 GGAGAAACGCTCGACAAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCGAAGAAGGCAAG 2461171 Query 252258 --AATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATG 252315 |||| || ||| || |||||||||| ||||||| ||| |||||| | Sbjct 2461172 GACATGG--GAGACGAAATGGCGCTCATCGTTGTTGAGCCTGTTGTTCCAGTCATGGAGA 2461229 Query 252316 TCCTGATTCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATT 252375 |||| ||| | || || | |||||||| | | | | ||||||||||||||| Sbjct 2461230 TCCTTGGAAAGATCCATCTCCTCAGCAGTCCAGAAAGAAGCCTCTGCCTTCTTGTACATT 2461289 Score = 93.3 bits (102), Expect = 9e-14 Identities = 125/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 251545 TATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATG 251604 || || || ||||| |||||||| |||| |||||||| || ||||| | |||||| Sbjct 2460399 TAATCCGACACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGGAGCGAGATCATATCCATG 2460458 Query 251605 AAGTCGAAGGGGTTTGT---GGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661 ||||||||||||||||| | | | | ||| || | | || || || || | | | Sbjct 2460459 AAGTCGAAGGGGTTTGTCACGCCGTAGGACTTCTCGCAA---CCGAGCGCGACAAGCAGG 2460515 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 ||||| ||||| ||||| | || || | ||| || | |||||||||||||| Sbjct 2460516 CGGTCGGCCACGAACTCGATGTATTGGCACATGAGCTTTGAGTTCATGCCAAT 2460568 Score = 89.7 bits (98), Expect = 1e-12 Identities = 333/515 (65%), Gaps = 13/515 (3%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||| ||||| || || ||||| |||||| || | || ||| ||||||| ||| Sbjct 2463215 GTGCATGCCCTCATCACGCGAGATGAGCTCGTTCGAGAACGTCAAGCCGGGCATCAGCCC 2463156 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 ||| ||| ||||||||||||||| | ||| | || ||||| | | ||||| ||| Sbjct 2463155 ACGCTTCTTGAGCCAGAAGATTGAGGCAAAACACCCGGAGAAGAATATGCCCTCTACAGC 2463096 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAAC---GACTTGTC--CTGCGA-CAAGAACTTCTG 252017 | | || || || |||||||| ||| |||| ||| | || | | || | | Sbjct 2463095 GGCGAAGGCGACCAGCCGCTCAGCGAACACGGACTGGTCATCAGCTATCCAG--CGT-AA 2463039 Query 252018 TGCCCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTT 252077 |||||| | |||||||| | ||| || || ||||| || || ||||| | | Sbjct 2463038 TGCCCAATCGGCCTTCTTCTTGATGCAGGGTATAGTCTCGATGGCGTCGAAGAGGAACGT 2462979 Query 252078 CCGCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGAT 252137 || |||| | |||| |||| | |||| || || ||||| |||| || |||| Sbjct 2462978 CCTCTCGTCTGGGTCCCTGATGTAAGTGTCAATGAGAAGGGAGTAGGTCTCGGAGTGGAC 2462919 Query 252138 GGATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGT 252197 | |||| | | |||||| | ||||||| ||||| | | | || || | Sbjct 2462918 GTTTTCGATCATGATCTGGAAGCCATAGAAGCATCGCGCCTCGGCGGCCTGAACCTCGTT 2462859 Query 252198 GGAAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAG 252257 ||||| | | | |||||| | || || || || | | ||||| ||| | || Sbjct 2462858 AGAAAACCGCTCGACGAGGTTCTCGTTGACGATACCGTCCGAGGCCGCAAAAAAGGCCAG 2462799 Query 252258 AATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTC 252317 | | || |||||||||||| || ||||||| || |||||||| ||| || Sbjct 2462798 GACGTAGGAGAGGAAGTGACGCTCGCTATCTGTGAGCTTCCCATTCCAGTCGGGAATATC 2462739 Query 252318 CTGATTCAGAGG--AACTTCTTCCACCGTCCAGAA 252350 || ||||| | ||||| ||||||||||| Sbjct 2462738 ATG--CGAGAGGTCGATCTCTTCGACCGTCCAGAA 2462706 >seq4 Length=2972551 Score = 96.9 bits (106), Expect = 7e-15 Identities = 422/650 (65%), Gaps = 31/650 (5%) Strand=Plus/Plus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||||| ||| || || || ||||| || || |||||||||| || ||||| || Sbjct 1422449 CTGCGACTGGCAGATGAATGCGCCACGGTCCGCGGCGAGGTCAAGAACCTTCTTCTGTGA 1422508 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCA----GGATGAATGCCAATAACCT 293230 |||||||| |||||||| | |||||||| || |||| |||| | || | Sbjct 1422509 AATCTCCCAGACGGTCTTGTAGATCGCCTTGACGTCGTCGGGGAT-AATGTCGATG---T 1422564 Query 293231 TCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTC-TCGGACCA-AGTCCC 293288 ||||||| ||||| |||||| |||||| |||||||| ||| ||| ||| || || Sbjct 1422565 TCTGGATGGACCCGTTGTTGGCGATAATCATATTCTTCAT-GTCATCGTTCCACAGGCCG 1422623 Query 293289 ACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGT 293348 | | | | ||||||||||| || | | | || || ||||||| |||||||| Sbjct 1422624 A-GCTCGACGAGCTCGCGGAGGAGCCACGGGCACACGACCTGGAACTCGCCAGCGAGCAC 1422682 Query 293349 GCGACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTG 293408 ||||||| | || ||||| ||| || ||| ||| || |||||| Sbjct 1422683 GCGACGGGTATAGATGTTGCTGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTG 1422742 Query 293409 AGCAGTAGATGCGGTAGGCATAAGAGCAGTCG-TCAGAGAGTTCCTCACACCCTTCT--- 293464 | || || ||||||||||| | || | || || |||||||| | || | || Sbjct 1422743 CGATGTGGAGGCGGTAGGCATGGGCGC-GACGAGGAGCGAGTTCCTAAGGCCGTGCTGAG 1422801 Query 293465 TGACACGCGATTCGAGACCCGCCCAGTCC---AGAGCAGTCTGAGGTGTAACACCCCAGA 293521 ||| | | ||||| ||||||||| ||| | || ||| || || ||||| | Sbjct 1422802 CGACCTTGGCCTTGAGACTGGCCCAGTCCCAAAGATCCGT---AGGAGTGACGCCCCATA 1422858 Query 293522 GATGATACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCAT 293581 | | || || | |||| | || ||| ||||| | || | ||| ||| Sbjct 1422859 GGTCGTATTGGAGCTGGCCCTGGGACGCGGGACTACCCTCGTATGTCTCGTAGGGACCA- 1422917 Query 293582 GCTCA-TCAGAG--AGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGA 293638 ||| || | | | ||| ||| |||||| || || || ||| || |||| ||| Sbjct 1422918 --TCAGTCTGTGCCATCTCACAACTTGCCTCGACGGCGGCGTGGTAGATTGTCTCGGAGA 1422975 Query 293639 TCTCACGGTTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACA 293698 ||| | |||||||| || |||| ||||||||||||||| ||| | ||| Sbjct 1422976 TCTGCAGATTGAGCTTTCGCGCCTCGATAGAGTCAAACGGCATACGGAGCGCCATGAAGG 1423035 Query 293699 CATCCTGC-AGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTT 293747 | | |||| |||||||| ||||| | || | ||| ||| | ||| |||| Sbjct 1423036 CGT-CTGCGAGACCCTGCACACCAATGCCGATGGGACGATGGCGCATGTT 1423084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834745611196