Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4 320 3e-82 seq2 255 1e-62 >seq4 Length=2972551 Score = 320 bits (354), Expect = 3e-82 Identities = 928/1430 (65%), Gaps = 89/1430 (6%) Strand=Plus/Plus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGA 243932 || |||||| ||||| |||| || ||| | |||| || || ||||| | ||| | || Sbjct 1422437 GACGTTGAGCGACTGCGACTGGCAGATGAATG-CGCCACGGTCCGCGGCGA-GGTCAAGA 1422494 Query 243933 GG-TCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAAC 243991 | |||||| || ||||| | | ||||||||||| | ||||| || ||||||| Sbjct 1422495 ACCTTCTTCTGTGAAATCTCCCAGACGGTCTTGTAGATCGCCTTGACGTCGTCGGGGATA 1422554 Query 243992 CCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTC 244051 ||||||||||| | || || |||| | |||| | | | ||||| ||||||| Sbjct 1422555 ATGTCGATGTTCTGGATGGACCCGTTGTTGGCGATAATCATATTCTTCATGTCATCGTTC 1422614 Query 244052 CACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCT---GTTCACCACCTGAAACTCT 244108 |||||||| | |||| | |||| ||| ||| | ||| ||||| ||||| Sbjct 1422615 CACAGGCCGA---GCTCGACGAGCTCGCGGAGGAGCCACGGGCACACGACCTGGAACTCG 1422671 Query 244109 CCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTG 244168 || | |||||||| || |||| ||||||| || ||||||| || ||| ||||| Sbjct 1422672 CCAGCGAGCACGCGACGGGTATAGATGTTGCTGGTGTATGGCTCGAAGCACTCGTTGTTG 1422731 Query 244169 CCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACG 244228 ||||| ||||||| ||| || || |||||||||| || || || |||||| | | Sbjct 1422732 CCCAGAATCTGCGATGTGGAGGCGGTAGGCATGGGCGCGACGAGGAGCGAGTTCCTAAGG 1422791 Query 244229 CCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCG 244288 |||||| || ||| | || || | | | |||| | || | || ||| Sbjct 1422792 CCGTGCT----GA-GCGACCT-TGGCCTTGAGACTGGCCCA---GTCCCAAAGATCCGTA 1422842 Query 244289 CGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAG 244348 | ||| |||||| | ||| | || ||| | |||| | |||| || |||||||| Sbjct 1422843 GGAGTGACGCCCCATAGGTCGTATTGGAGCTGGCCCTGGGACGCGGGACTACCCTCGTAT 1422902 Query 244349 GTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAG 244408 ||| ||||||||| || ||| |||| || ||| || | |||| |||||||| |||| Sbjct 1422903 GTCTCGTAGGGACCATCAGTCTGTGCCATCTCACAACTTGCCTCGACGGCGGCGTGGTAG 1422962 Query 244409 ATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCC 244468 || |||||| ||||| | || | | || |||| | || || || || | Sbjct 1422963 ATTGTCTCGGAGATCTGCAGATTGAGCTTTCGCGCCTCGATAGAGTCAAACGGCATACGG 1423022 Query 244469 ATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTG 244528 | | ||||||| |||| || || |||||||| || ||||||||||| | || ||| || Sbjct 1423023 AGCGCCATGAAGGCGTCTGCGAGACCCTGCACACCAATGCCGATGGGACGATGGCGCATG 1423082 Query 244529 TTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588 || ||||| ||| ||||| | ||||| ||||| ||||||| | |||||||||| Sbjct 1423083 TTCGAGCGGCGGGCCTCGGGAATCGGGTAGTAGTTGGCGTCGATAATGCGGTTGAGGTTG 1423142 Query 244589 CGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCG 244648 || || | | | ||| || |||| || |||| ||||| | ||||||| Sbjct 1423143 AAGGCGACAACCTTGGCAACGGCGTGCAGCTTCTTGAAGTTGTACTTGCC---ATCCTCG 1423199 Query 244649 GCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACC 244708 || || | | ||||| | || || ||||||||||| | Sbjct 1423200 ATGAAGGAGGGAAT---------------GGCGATGGATGCAAGATTGCAGACGGCAGTC 1423244 Query 244709 TCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCC 244768 || || | | || || | || |||||| || || ||||| ||||||||||||| Sbjct 1423245 TCATCGGGGGAGGAATATTCGATAATCTCCGTACATAGGTTGGACGACTTGATGGTGCCG 1423304 Query 244769 AGGTGCTGGTGATTGGACTTGGC-------GTTG-----------CAGGCGT-------- 244802 || | ||| || || ||||| | |||| || |||| Sbjct 1423305 AGATTCTGCTGGTTTGACTTCCCTGTATTGGTTGTCAGTAGTAGCCATGCGTTCAATGGA 1423364 Query 244803 ------------------------CCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCT 244838 |||| ||||||||||| || || || ||||||| | Sbjct 1423365 AAGTGCACTTACTGTTGGCCGCATCCTTATAGAGCATGAAAGGACCACCAGTCTCGATTT 1423424 Query 244839 GGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCT 244898 |||| | |||| | || ||| || | | ||||| || ||| | || || |||| Sbjct 1423425 GGGCCTCCAGGATGGCGTACCAAAGCTTCTGAGCCTCGATAGTCTTCCGTGCGCGACCCT 1423484 Query 244899 CTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGG 244958 | |||||| | ||| || ||||| ||||| |||||||| |||| || || | Sbjct 1423485 CGCGCTCGTACTGCTCGTAGAGTGCCTCAAACTCATCACCCCAGACTTCGTGGAGACCAG 1423544 Query 244959 GGCACGACGCC-GGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAG 245017 | | || ||||| | |||| ||| | ||| || || ||| | || |||||| Sbjct 1423545 GTG-CTTCGTTTGGGCAGAAGAGAGACCATTTGCCACCAGACTCGACGCGCTTCATGAAC 1423603 Query 245018 AGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG 245077 || ||||||||||| || || | ||||||||| | || | ||| ||| ||| | Sbjct 1423604 AGATCGGGGATCCAAAGCGCGTAGAAGAGGTCACGGGCTCGAACCTCCTCCTTGCCGTGG 1423663 Query 245078 TTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCG 245137 ||||| | ||| || | || || |||| |||| |||||||||| || | ||||| ||| Sbjct 1423664 TTCTTGCGCAGGTCGATGAACTCGAAGATGTCGGCGTGCCAGGGTTCGAGGTAGATGGCG 1423723 Query 245138 AGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATG 245197 | ||||| || ||||||||||| || || || || || | || |||| | ||| Sbjct 1423724 AACGCGCCAGGGCGCTTGTTGCCACCTTGATCGACATACCGCGCGGTAGCGTCGTAGACA 1423783 Query 245198 CGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTA 245247 || || |||| || || ||||| |||| |||||||||||| ||||| Sbjct 1423784 CGGAGCATAGGAACAATTCCGTTGGAGTAACCGTTGGTGCCCGCAATGTA 1423833 >seq2 Length=3722621 Score = 255 bits (282), Expect = 1e-62 Identities = 379/532 (71%), Gaps = 13/532 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 |||||||| || || ||||| ||||| || ||||| |||||||| | | |||| Sbjct 2462799 CTGGCCTTTTTTGCGGCCTCGGACGGTATCGTCAACGAGAACCTCGTCGAGCGGTTTTCT 2462858 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || ||||| ||| | |||||||| |||||||| ||||||||||| || || ||| Sbjct 2462859 AACGAGGTTCAGGCCGCCGAGGCGCGATGCTTCTATGGCTTCCAGATCATGATCGAAAAC 2462918 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAG 42599 || ||||| ||| ||| || || |||| |||| |||||| ||| || | |||| Sbjct 2462919 GTCCACTCCGAGACCTACTCC---CTTCTCATTGACACTTACATCAGGGACCCAGACGAG 2462975 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 | | || ||| | ||||| ||||| || |||||||||||||||||||| || ||| Sbjct 2462976 AGGACGTTCCTCTTCGACGCCATCGAGACTATACCCTGCATCAAGAAGAAGGCCGATTGG 2463035 Query 42660 GCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719 || | |||||| | | | | | ||||| ||| ||||||| ||||| || Sbjct 2463036 GCATTACGCTGGATAGCTGATGACCAGTCCGTGTTCGCTGAGCGGCTGGTCGCCTTCGCC 2463095 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAG 42779 || || |||||||| |||||||| || || ||||| ||||||||||||||| || Sbjct 2463096 GCTGTAGAGGGCATATTCTTCTCCGGGTGTTTTGCCTCAATCTTCTGGCTCAAGAAGCGT 2463155 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 | | ||||||||| | || ||||||||||| |||||| | || ||||| |||| Sbjct 2463156 GGGCTGATGCCCGGCTTGACGTTCTCGAACGAGCTCATCTCGCGTGATGAGGGCATGCAC 2463215 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC-ACAAGCCC-TCGAAGGAGC 42897 | ||||| || || ||||||||| | || ||| | | || | | | || ||| || Sbjct 2463216 ACCGACTTCGCTTGTCTCCTGTTCCAG---CATCTCCGTCGACGACCACATCCAAGCAGA 2463272 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 | || | |||||||| |||||||| |||||||||||||| ||||| || Sbjct 2463273 GTTGCCAAG--ATCATCACCGAGGCCGTCGAGATCGAGAAGGAATTCCTTAC 2463322 Score = 250 bits (276), Expect = 5e-61 Identities = 375/532 (70%), Gaps = 23/532 (4%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| ||||| |||||||| | | | ||| Sbjct 2461171 CTTGCCTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACCTTGTCGAGCGTTTCTCC 2461112 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || ||||| ||| | ||||| ||||| |||||||||||||| || || |||||| Sbjct 2461111 AACGAGGTCCAGGCCGCCGAGGCCCGCTGTTTCTACGGCTTCCAAATCATGATGGAGAAC 2461052 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | || || ||| ||| || || || | || |||||| ||| ||| ||||| Sbjct 2461051 ATCCATTCCGAGACCTACTCCCTCCTCATCGATACCTACATCAAGGACCCCAGGCAGCGT 2460992 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | || || | ||||| |||||||| || ||||||||||||||||| |||||||| Sbjct 2460991 GAGTACCTCTTTGACGCCATCGAGACGATCCCTTGCATCAAGAAGAAGGCCGACTGGGCC 2460932 Query 42663 CTCAACTGGAT------CGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTT 42716 ||| |||||| | ||| | ||| | |||| || | || || ||||| Sbjct 2460931 CTCCGCTGGATCTCTGACAAGAATTCCG------CTTTCGCGGAACGCCTTGTCGCCTTC 2460878 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 | || |||||||| ||||||||||| || ||||||| || ||||||||||||||| || Sbjct 2460877 GCTGCTGTCGAGGGTATCTTCTTCTCTGGTTCCTTCGCGTCTATCTTCTGGCTCAAGAAG 2460818 Query 42777 AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 | | ||||||||| ||||| ||||||||||| |||||| | |||||||| || Sbjct 2460817 CGCGGCTTGATGCCCGGTCTCACTTTCTCGAACGAGCTCATCTCGCGCGACGAGGGTATG 2460758 Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGC----CCTCGAA 42892 || | |||||||| ||| | || ||| || || |||| | | || || |||| Sbjct 2460757 CACACCGACTTTGCGTGCTTGCTCTTC---AGTCATCTCAAGAGAAGGCCGCACCCCGAA 2460701 Query 42893 GGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 | || | || ||||||||||| || | ||||||| |||||||| Sbjct 2460700 G----TCGTTAGCAAGATTATCACGGAGGCTGTCGCGATCGAGCAGGAGTTC 2460653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337358538560