Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 138 3e-27 seq3 136 9e-27 >seq1 Length=4606855 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 288268 AGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327 || || | |||||| || || ||||| || ||||| | ||||||||| ||||| || || Sbjct 1904472 AGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCGTCCTCCAAC 1904413 Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || |||||||| || ||||| || | || || || || || ||||| || Sbjct 1904412 TGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCAGGCGGAATACCCTCCTTGTCCTGAATC 1904353 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 ||||| |||||||| || || | || || || || || |||||||||||||| || Sbjct 1904352 TTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCC 1904293 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||| |||||||| Sbjct 1904292 GTGAGGGTCTTGACGAAAATCTGCAT 1904267 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | ||| || | ||||| ||| || || |||||||| ||||||| Sbjct 1903759 CCACCGCGGAGACGAAGGACCAAATGAAGCGTTGACTCCTTCTGGATATTGTAGTCGGAA 1903700 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || |||||||||||||| || || | ||| Sbjct 1903699 AGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCAGGCGGG 1903640 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || ||||| ||||| || ||||| || || || || || | ||| ||| || || Sbjct 1903639 ATGCCCTCTTTGTCCTGAATCTTCGCCTTAACATTATCGATGGTGTCGGACGACTCGACC 1903580 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || || |||||||| || || ||||| Sbjct 1903579 TCAAGAGTGATAGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCAT 1903533 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || || || | ||| || || || || || | || || || |||||| Sbjct 1904229 TCCTTTTGGATGTTGTAATCCGAGAGAGTACGACCATCCTCGAGCTGCTTGCCAGCGAAG 1904170 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||||| || || | |||||| || || || ||||| || ||||| |||||||| Sbjct 1904169 ATCAGACGTTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTG 1904110 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || || |||||||||||||| || || || ||||| ||| Sbjct 1904109 TCGATGGTATCAGAAGACTCGACCTCCAGCGTGATCGTCTTGCCAGTAAGCGTCTTCACG 1904050 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 1904049 AAAATCTGCATT 1904038 >seq3 Length=3223173 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||||| || || ||||| || ||||| | | Sbjct 2801683 CCACCACGGAGACGGAGGACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 2801742 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || |||||||| |||||||| || ||||| Sbjct 2801743 AGCGTGCGCCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG---TCTGGC 2801799 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| ||||| |||||||| || || | || ||| || Sbjct 2801800 GGAATACCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCCGACGACTCA 2801859 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| |||||||| || || ||||||||||| |||||||| Sbjct 2801860 ACCTCCAAGGTGATGGTCTTCCCCGTGAGCGTCTTGACGAAGATCTGCAT 2801909 Score = 127 bits (140), Expect = 5e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 288266 CGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTA 288325 |||| |||| ||||| || || || || || ||||| | || ||||| ||||| || | Sbjct 2801985 CGAGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGGGTGCGACCGTCCTCCA 2802044 Query 288326 ATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGA 288385 | || || || || ||||||| ||||| || | ||||| || || |||||||||| Sbjct 2802045 ACTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGA 2802104 Query 288386 TTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCC 288445 | ||||| || || || || || | ||| || || || ||||| ||||||||||| | Sbjct 2802105 TCTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGAGTGATCGTCTTGC 2802164 Query 288446 CGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| ||||| ||||| || ||||| Sbjct 2802165 CCGTCAGCGTCTTTACGAAGATTTGCAT 2802192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652042165768