Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4 131 2e-25 seq3 113 4e-20 seq1 113 4e-20 >seq4 Length=2972551 Score = 131 bits (144), Expect = 2e-25 Identities = 324/490 (66%), Gaps = 4/490 (1%) Strand=Plus/Plus Query 145720 TCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGTC 145779 ||||| ||||||| |||| || |||||||| |||||| |||||||||||||| ||| Sbjct 1422309 TCGACCGTGAACTTGATCGCCTGTGCGGCCGGGCGTGTGCGGAGATAGTACATGCCCGTC 1422368 Query 145780 TTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA--TGACCGAGTACGTGGGTT 145837 || || |||| ||| ||||||||| ||||||| || || ||| | ||| || Sbjct 1422369 TTCAGACCCTTCTTCCAGCCGTAAAAGTGCATGCTCGTCAACTGCCCG--TTCGTCGGCG 1422426 Query 145838 CGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCA 145897 | | | || || || || ||| ||||| | | ||||| ||||| | Sbjct 1422427 CTTGCAGGTGGACGTTGAGCGACTGCGACTGGCAGATGAATGCGCCACGGTCCGCGGCGA 1422486 Query 145898 TGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGCT 145957 ||| | | ||| | ||| ||||| |||| || ||| ||||||||| | Sbjct 1422487 GGTCAAGAACCTTCTTCTGTGAAATCTCCCAGACGGTCTTGTAGATCGCCTTGACGTCGT 1422546 Query 145958 GGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATT 146017 ||| || ||| |||||||| | ||||| || | ||| | || | || || | Sbjct 1422547 CGGGGATAATGTCGATGTTCTGGATGGACCCGTTGTTGGCGATAATCATATTCTTCATGT 1422606 Query 146018 CTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAA 146077 | | | | | | || ||||| | || ||| || || || ||||| | Sbjct 1422607 CATCGTTCCACAGGCCGAGCTCGACGAGCTCGCGGAGGAGCCACGGGCACACGACCTGGA 1422666 Query 146078 ACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGT 146137 ||||||| ||||| ||||| | ||| | |||||||||| | |||||||| |||||| Sbjct 1422667 ACTCGCCAGCGAGCACGCGACGGGTATAGATGTTGCTGGTGTATGGCTCGAAGCACTCGT 1422726 Query 146138 TGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTC 146197 |||| || || ||||||| || | |||||||||||| ||| || || | ||||| | Sbjct 1422727 TGTTGCCCAGAATCTGCGATGTGGAGGCGGTAGGCATGGGCGCGACGAGGAGCGAGTTCC 1422786 Query 146198 TCACGCCGTG 146207 | | |||||| Sbjct 1422787 TAAGGCCGTG 1422796 >seq3 Length=3223173 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || ||||| ||||| || || |||||| || || | ||| || || || | Sbjct 2802001 CTCCTTCTGAATGTTGTAGTCAGACAGGGTGCGACCGTCCTCCAACTGCTTGCCCGCAAA 2802060 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 |||||| |||||||| || ||||| ||||||||||| ||| ||| ||| ||||| | Sbjct 2802061 GATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTCGCCTTGACATT 2802120 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| |||||| | | ||| || |||| || | ||| ||||| ||||| || ||||| Sbjct 2802121 GTCGATGGTGTCGGAAGACTCCACCTCGAGAGTGATCGTCTTGCCCGTCAGCGTCTTTAC 2802180 Query 127102 AAAAATCTGCAT 127113 || || ||||| Sbjct 2802181 GAAGATTTGCAT 2802192 Score = 111 bits (122), Expect = 1e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || ||||| ||||| ||| | || || || || ||||| || || Sbjct 2802276 CGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCGTCCTCCAGCTGCTTCCC 2802335 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| |||| | |||||||| ||||| || ||||||||||| || ||| ||| ||| Sbjct 2802336 GGCGAAGATAAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTATCTTGGATCTTCGCCTT 2802395 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 | |||| |||| |||||| | ||||||||||| ||| | || |||||||||| | Sbjct 2802396 CACGTTG-TCGATGGTGTCGGAGGACTCGACTTCGAGGGTGATGGTCTTGCCGGTCAAGG 2802454 Query 127095 TTTTTACAAAAATCTGCATGGCT 127117 | || || || ||||||||| || Sbjct 2802455 TCTTCACGAAGATCTGCATGCCT 2802477 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| || | |||||| ||| || ||||| || || ||| | Sbjct 2801718 CTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGCCCATCCTCGAGCTGCTTGCCGGCGAA 2801777 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 ||| | |||||||| || || || || |||||||||||| ||| ||| ||| | ||| Sbjct 2801778 GATGAGACGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 2801837 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | |||| ||||||| ||| || || | ||| | || || || || || || || | Sbjct 2801838 G-TCGATCGTGTCCGACGACTCAACCTCCAAGGTGATGGTCTTCCCCGTGAGCGTCTTGA 2801896 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 2801897 CGAAGATCTGCAT 2801909 >seq1 Length=4606855 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||| || | || | || ||||| ||||| || |||||||| | || ||| | Sbjct 1904253 CGCAAGACAAGGTGAAGTGTCGACTCCTTTTGGATGTTGTAATCCGAGAGAGTACGACCA 1904194 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| || ||||| || || || |||||||||||| Sbjct 1904193 TCCTCGAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCAGGTGGGATGCCCTCCTTG 1904134 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| || ||| ||| | ||||| ||| ||| || | | |||||| || | || | Sbjct 1904133 TCCTGAATCTTCGCCTTCACGTTGT-CGATGGTATCAGAAGACTCGACCTCCAGCGTGAT 1904075 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||||| || || || || || ||||||||||| Sbjct 1904074 CGTCTTGCCAGTAAGCGTCTTCACGAAAATCTGCAT 1904039 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || || |||||| || ||||||| ||| || ||||| || ||||| | Sbjct 1903952 CTCCTTCTGGATGTTATAATCGGACAACGTGCGACCATCCTCAAGCTGCTTCCCAGCAAA 1903893 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 || | ||||||||||| ||||| || || |||||||| ||| || ||| | ||| Sbjct 1903892 AATGAGGCGCTGCTGATCAGGAGGGATCCCTTCCTTGTCTTGGATCTTTGCCTTAACGTT 1903833 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | |||| ||||||| | |||||| |||| || | || || || |||| || || | Sbjct 1903832 G-TCGATCGTGTCCGAAGACTCGACCTCGAGAGTGATAGTCTTTCCTGTCAACGTCTTCA 1903774 Query 127101 CAAAAATCTGCAT 127113 | ||||| ||||| Sbjct 1903773 CGAAAATTTGCAT 1903761 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| || | |||||| || || | ||| || || ||| | Sbjct 1904458 CTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCCCGCGAA 1904399 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 ||| | |||||||| || || || || |||||||||||| || ||| ||| | ||| Sbjct 1904398 GATGAGGCGCTGCTGGTCAGGCGGAATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTT 1904339 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 || ||| ||||||| |||||| || | || | ||| ||||| || || || || | Sbjct 1904338 GT-CGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCCGTGAGGGTCTTGA 1904280 Query 127101 CAAAAATCTGCAT 127113 | ||||||||||| Sbjct 1904279 CGAAAATCTGCAT 1904267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499872773440