Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq3 100 3e-16 >seq1 Length=4606855 Score = 118 bits (130), Expect = 1e-21 Identities = 169/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | || | ||| |||||||| ||||| |||||||| || ||| Sbjct 1903762 ATACCACCGCGGAGACGAAGGACCAAATGAAGCGTTGACTCCTTCTGGATATTGTAGTCG 1903703 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || | || || || ||| | |||| ||||||||||| ||| Sbjct 1903702 GAAAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCAGGC 1903643 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| ||||| || ||||| || || | || | ||||||||| |||||| Sbjct 1903642 GGGATGCCCTCTTTGTCCTGAATCTTCGCCTTAACATTATCGATGGTGTCGGACGACTCG 1903583 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || || ||||| | || ||||| || || || || ||||| |||||||| ||| || Sbjct 1903582 ACCTCAAGAGTGATAGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCATACCGCCAC 1903525 Score = 104 bits (114), Expect = 2e-17 Identities = 168/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | ||| || || || || || || ||||||||||| || ||||| Sbjct 1904268 ATACCTCCCCGCAGACGCAAGACAAGGTGAAGTGTCGACTCCTTTTGGATGTTGTAATCC 1904209 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || | ||| || | || || || ||| | |||| ||||||||||| || Sbjct 1904208 GAGAGAGTACGACCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCAGGT 1904149 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || ||||| || || | || | || | ||| || |||||||| Sbjct 1904148 GGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCA-CGTTGTCGATGGTATCAGAAGACTC 1904090 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||| || || || | ||| ||||| || || || || || ||||| ||||| ||| || Sbjct 1904089 GACCTCCAGCGTGATCGTCTTGCCAGTAAGCGTCTTCACGAAAATCTGCATTCCGCCAC 1904031 >seq3 Length=3223173 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||| || || || || | ||||| || |||||||| || || ||||| || ||| Sbjct 2802038 TCCTCCAACTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTA 2802097 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 || || || || |||| || | ||||||||||||||| || |||||||| | | Sbjct 2802098 TCCTGGATCTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGAGTGATC 2802157 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || || ||||| || |||||||| Sbjct 2802158 GTCTTGCCCGTCAGCGTCTTTACGAAGATTTGCAT 2802192 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| || || || ||| | || | || |||||||| ||||| ||||| || ||| Sbjct 2802319 TCCTCCAGCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTA 2802378 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| || || || | || | || | ||||||||| |||||||||||||| || | Sbjct 2802379 TCTTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCGGAGGACTCGACTTCGAGGGTGAT 2802437 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||| | || || || || || ||||| Sbjct 2802438 GGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 2802473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002318593760