Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 140 4e-28 seq2 122 1e-22 seq1 96.9 4e-15 >seq4 Length=2972551 Score = 140 bits (154), Expect = 4e-28 Identities = 250/358 (70%), Gaps = 8/358 (2%) Strand=Plus/Plus Query 116537 ACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACT 116596 |||| |||| ||||||||| |||||||| | || || ||||| |||||| || Sbjct 1423371 ACTTACTGTTGGCCGCATCCTTATAGAGCATGAAAGGACCACCAGTCTCGATTTGGGCCT 1423430 Query 116597 TGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGG--CGTTGGCTCGCCCCTCCT 116653 || || || | ||| | | || | | || | | ||| ||| || || ||||| Sbjct 1423431 CCAGGATGGCGTACCAAAGCTTCTGAGCCTCG-ATAGTCTTCCGT--GCGCGACCCTCGC 1423487 Query 116654 CCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAG-CCTCTGAGAGCCCTGGT 116712 |||||||| |||||| ||||||||||| |||||| ||| | || ||| || ||| Sbjct 1423488 GCTCGTACTGCTCGTAGAGTGCCTCAAACTCATCACCC-CAGACTTCGTGGAGACCAGGT 1423546 Query 116713 GCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 116772 || | | ||| |||||||||||||||| ||||| ||| || ||||||||||| || Sbjct 1423547 GCTTCGTTTGGGCAGAAGAGAGACCATTTGCCACCAGACTCGACGCGCTTCATGAACAGA 1423606 Query 116773 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 116832 || |||||||| ||||| ||||||| || || ||| | || || | || || || Sbjct 1423607 TCGGGGATCCAAAGCGCGTAGAAGAGGTCACGGGCTCGAACCTCCTCCTTGCCGTGGTTC 1423666 Query 116833 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890 |||| || | || || | ||| || |||||||| ||||| ||||| | |||| Sbjct 1423667 TTGCGCAGGTCGATGAACTCGAAGATGTCGGCGTGCCAGGGTTCGAGGTAGATGGCGA 1423724 Score = 95.1 bits (104), Expect = 1e-14 Identities = 284/431 (66%), Gaps = 18/431 (4%) Strand=Plus/Plus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935 ||||| || ||||| ||| | |||||||||| | ||||||||||| |||||||| Sbjct 1422666 AACTCGCCAGCGAGCACGCGACGGGTATAGATGTTGCTGGTGTATGGCTCGAAGCACTCG 1422725 Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995 ||||| |||| || || | ||||||||| || |||||||| || | ||| || ||| Sbjct 1422726 TTGTTGCCCAGAATCTGCGATGTGGAGGCGGTAGGCATGGGCGCGACGAGGAGCGAGTTC 1422785 Query 115996 CGGAGACC-----CACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGT--CGTAGTTGAG 116048 | || || | | ||| || ||||||| | |||||| | || | | Sbjct 1422786 CTAAGGCCGTGCTGAGCGACCT--TG---GCCTTGAGACTGGCCCAGTCCCAAAGATCCG 1422840 Query 116049 CTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTC 116108 | | | | | |||| | || | ||||| || |||||||| || ||||| Sbjct 1422841 -TAGGAGTGACGC-CCCATAGGTCGTATTGGAGCTGGCCCTGGGACGCGGGACTACCCTC 1422898 Query 116109 AAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTG 116168 ||||||| || || || ||| || |||| || | || ||||||| ||| ||||| Sbjct 1422899 GTATGTCTCGTAGGGACCATCAGTCTGTGCCATCTCACAACTTGCCTCGACGGCGGCGTG 1422958 Query 116169 ATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT--GGCCTCGTCGGAATCAAACGCG 116226 || |||||||| | || | ||| | || || |||||| || ||||||| Sbjct 1422959 GTAGATTGTCTCGGAGATCTGCAGATTGA--GCTTTCGCGCCTCGATAGAGTCAAACGGC 1423016 Query 116227 AGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGT 116286 | |||| | || || | || |||||||| || ||||| | ||| || || ||||| Sbjct 1423017 ATACGGAGCGCCATGAAGGCGTCTGCGAGACCCTGCACACCAATGCCGATGGGACGATGG 1423076 Query 116287 CTCATATTAGA 116297 | ||| || || Sbjct 1423077 CGCATGTTCGA 1423087 >seq2 Length=3722621 Score = 122 bits (134), Expect = 1e-22 Identities = 346/523 (66%), Gaps = 13/523 (2%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | ||||||||| || |||||||| || |||||||| ||||| Sbjct 2460744 GCAAAGTCGGTGTGCATACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAAAGTGAGACCG 2460803 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | || |||||||| | |||||| || | || || |||||||||||||| Sbjct 2460804 GGCATCAAGCCGCGCTTCTTGAGCCAGAAGATAGACGCGAAGGAACCAGAGAAGAAGATA 2460863 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACT-TTGT-ATCAA 127697 ||||| ||| ||||| || | || || || || || ||||| | | |||| | | Sbjct 2460864 CCCTCGACAGCAGCGAAGGCGACAAGGCGTTCCGCGAA--AGCGGAATTCTTGTCAGAGA 2460921 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 ||| | ||||| | ||||| |||| ||| || |||| |||| ||| || |||| Sbjct 2460922 TCCAGCGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATCGTCTCGATGGCGTCAA 2460981 Query 127758 AGAGTTCCT--TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 127815 |||| | || | ||| || || |||||||| |||| ||||| || || || Sbjct 2460982 AGAGGTACTCACGCTGCCTG--GGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTAGGT 2461039 Query 127816 TTCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTA 127874 ||| |||| | | ||| || | || | |||||||| |||| || ||| Sbjct 2461040 CTCGGAATGGATGTTCTCCATCAT-GATTTGGAAGCCGTAGAAACAGCGGGCCTCGGCGG 2461098 Query 127875 TCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 127934 ||| ||||| | || ||| | | ||||| || || || || || | | Sbjct 2461099 CCTGGACCTCGTTGGAGAAACGCTCGACAAGGTTCTCGTTGACGATGCCGTCCGAGGCGG 2461158 Query 127935 CAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAG---GGTCTTCC 127991 | || || || |||| || | ||| | | |||| | ||| || | | |||| Sbjct 2461159 CGAAGAAGGCAAGGACATGGGAGACGAAATGGCGCTCATCGTTGTTGAGCCTGTTGTTCC 2461218 Query 127992 AGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||| | ||||||||| || ||||| | |||||| |||||||| Sbjct 2461219 AGTCATGGAGATCCTTGGAAAGATCCATCTCCTCAGCAGTCCA 2461261 >seq1 Length=4606855 Score = 96.9 bits (106), Expect = 4e-15 Identities = 268/407 (66%), Gaps = 7/407 (2%) Strand=Plus/Plus Query 12704 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 12763 ||| || ||||| ||||| | ||||| ||| || | ||| ||||| || | || Sbjct 2834498 ATCGAAACGACCGGGGCGCATCAGGGCCGAGTCGAGAACATCGGGCCGGTTGGTACCAGC 2834557 Query 12764 GATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 12823 || ||| |||| | | || | | ||||||| ||||||||| | ||| || || | Sbjct 2834558 GAGGACGACGACGTGCTCCTGGGTCCCGAAGCCGTCCATCTCAACGAGGAGCTGGTTCAG 2834617 Query 12824 GGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACT----GCGTTGCTTACCGA 12879 || || || ||||| || || || || | | | || || ||| ||| |||| Sbjct 2834618 CGTCTGCTCGCGTTCGTCGTT-GCCACCAAAACCCTTGCCCTTGCCGCGAGACTTGCCGA 2834676 Query 12880 CGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGA 12939 ||| ||||||||||| ||||| | ||| | || ||||| ||| | |||| Sbjct 2834677 TGGCATCAATTTCGTCGATGAAGATGATCGAAGGGGCATTTTTCTTTGCAGTCGCGAAGA 2834736 Query 12940 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGA-A 12998 ||| || || | || ||||||||| || || | || || || | || | |||| | Sbjct 2834737 GATCGCGGACGCGGGAGGAACCGACACCGACGAAGAGTTCGACGAACTCGGAGCCGGACA 2834796 Query 12999 CATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCC 13058 || | | |||||||||| || || ||||| | ||| ||||| |||||||| || Sbjct 2834797 CAGAGTA-GAAGGGGACGCCGGCCTCGCCCGCAGTCGCTTTCGCGAGTAGGGTCTTGCCA 2834855 Query 13059 GTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 || || || || | ||| | |||||| | |||||| | ||||| Sbjct 2834856 GTACCGGGAGGACCAGAGAGGATGGCACCTCTGGGGATCTTCGCACC 2834902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506003660960