Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1 145 2e-29 seq3 143 6e-29 >seq1 Length=4606855 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||||||||| || |||||||||||||||| |||||| || | | ||| Sbjct 1904259 CGCAGACGCAAGACAAGGTGAAGTGTCGACTCCTTTTGGATGTTGTAATCCGAGAGAGTA 1904200 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || |||||||| ||||| |||||||| || || || Sbjct 1904199 CGACCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCAGGTGGGATGCCC 1904140 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||| |||| ||| || | | || || |||| | Sbjct 1904139 TCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATGGTATCAGAAGACTCGACCTCCAGC 1904080 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || || || ||||| ||||| || Sbjct 1904079 GTGATCGTCTTGCCAGTAAGCGTCTTCACGAAAATCTG 1904042 Score = 140 bits (154), Expect = 8e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 |||||||||| || |||||| |||| ||||||||||| | || | || || |||| Sbjct 1904474 CAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCGTCCTCCA 1904415 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 |||||| || ||||||||||| ||||||||||| || ||| || || ||||||| Sbjct 1904414 ACTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCAGGCGGAATACCCTCCTTGTCCTGAA 1904355 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| ||||||| |||| ||||| | | || || |||| |||||||||||| | Sbjct 1904354 TCTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGC 1904295 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||| || || || ||||| || Sbjct 1904294 CCGTGAGGGTCTTGACGAAAATCTG 1904270 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | || || || |||||||| |||| |||||||| | | || | || || Sbjct 1903744 AGGACCAAATGAAGCGTTGACTCCTTCTGGATATTGTAGTCGGAAAGGGTACGACCGTCC 1903685 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| ||||| |||||||| || || || ||| ||| Sbjct 1903684 TCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCAGGCGGGATGCCCTCTTTGTCC 1903625 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 1903624 TGAATCTTCGCCTTAACATTATCGATGGTGTCGGACGACTCGACCTCAAGAGTGATAGTC 1903565 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || ||||| ||||| Sbjct 1903564 TTGCCCGTGAGGGTCTTGACAAAGATTTG 1903536 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||||||||||||||| |||| |||||||||| | ||| | ||||| Sbjct 3842197 AGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCACTGAGAGTACGGCCATCC 3842138 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| |||||||| || || | ||| || || || Sbjct 3842137 TCGAGCTGCTTGCCGGCGAAAATCAGCCTCTGTTGATCAGG 3842097 Score = 89.7 bits (98), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || || |||||||| |||| ||||||||| | | ||| | || || Sbjct 1903516 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGATAGAGTGCGACCGTCC 1903457 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 || |||||||| || |||||||| || |||||||| || ||| Sbjct 1903456 TCGAGCTGCTTGCCTGCGAAGATAAGGCGCTGCTGATCGGGA 1903415 >seq3 Length=3223173 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||| || |||||| |||| ||||||||| | | || | ||||| Sbjct 2801698 AGGACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGCCCATCC 2801757 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||||||||||||||||||||| || ||| || || ||| Sbjct 2801758 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGCGGAATACCCTCCTTGTCC 2801817 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| ||||| | | || || ||||| ||||| ||| Sbjct 2801818 TGGATCTTCGCCTTCACGTTGTCGATCGTGTCCGACGACTCAACCTCCAAGGTGATGGTC 2801877 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || || || Sbjct 2801878 TTCCCCGTGAGCGTCTTGACGAAGATCTG 2801906 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 |||||||| || |||||||| || | ||||||||| | | ||| | || || |||||| Sbjct 2802268 AGGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCGTCCTCCAGC 2802327 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| ||||||||||| |||||||||||||| || || || || || || ||| Sbjct 2802328 TGCTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTATCTTGGATC 2802387 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||||||| |||| |||||| | | || || || | ||||| ||||| || Sbjct 2802388 TTCGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACTTCGAGGGTGATGGTCTTGCCG 2802447 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 || | || ||||| || || || Sbjct 2802448 GTCAAGGTCTTCACGAAGATCTG 2802470 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 ||||| || || |||||| || | ||||||||||| || || | || || |||| | Sbjct 2801987 AGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGGGTGCGACCGTCCTCCAAC 2802046 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| || || ||||| | ||||||||||| ||| || || || ||||| ||| Sbjct 2802047 TGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATC 2802106 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||| || |||| |||||| | | || || || | ||||||||||| ||| Sbjct 2802107 TTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGAGTGATCGTCTTGCCC 2802166 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||| Sbjct 2802167 GTCAGCGTCTTTACGAAGATTTG 2802189 Score = 93.3 bits (102), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 ||||| || ||||||||||| |||| |||||| || | | ||| | || || || ||| Sbjct 2802547 AGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGCCCGTCCTCGAGC 2802606 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 ||||| ||||| |||||||||||||||||||| ||| Sbjct 2802607 TGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGA 2802642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178919243630452