Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3 152 6e-32 seq1 140 4e-28 seq6 82.4 9e-11 >seq3 Length=3223173 Score = 152 bits (168), Expect = 6e-32 Identities = 154/198 (78%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| ||||| |||||||| || || |||||| | || ||||||||||||||| Sbjct 2801713 GTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGCCCATCCTCGAGCTGCTTGCCG 2801772 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| || | ||||||||||| | ||| | | |||||||||| ||||||| ||| Sbjct 2801773 GCGAAGATGAGACGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTCGCCTTC 2801832 Query 46517 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | ||| | | | |||||| ||| || || |||| |||||||| || ||||| ||||| Sbjct 2801833 A-CGTTGTCGATCGTGTCCGACGACTCAACCTCCAAGGTGATGGTCTTCCCCGTGAGCGT 2801891 Query 46576 TTTAACAAAGATTTGCAT 46593 || || ||||| ||||| Sbjct 2801892 CTTGACGAAGATCTGCAT 2801909 Score = 143 bits (158), Expect = 3e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| || || |||||||| || || ||||| |||| || | ||||||||| Sbjct 2801996 GTGCTCTCCTTCTGAATGTTGTAGTCAGACAGGGTGCGACCGTCCTCCAACTGCTTGCCC 2802055 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 || || ||||||||||||||||| | || | || |||||| ||| ||||||| |||| Sbjct 2802056 GCAAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTCGCCTTG 2802115 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||| || ||||| || | ||||| || |||||||||||||| Sbjct 2802116 ACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGAGTGATCGTCTTGCCCGTCAGCGTC 2802175 Query 46577 TTAACAAAGATTTGCAT 46593 || || ||||||||||| Sbjct 2802176 TTTACGAAGATTTGCAT 2802192 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| ||||| || |||| || |||||||| |||||||| Sbjct 2802282 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCGTCCTCCAGCTGCTTCCCGGCGAA 2802341 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| ||| | || |||||| || ||||||| ||| | ||| Sbjct 2802342 GATAAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTATCTTGGATCTTCGCCTTCA-CGT 2802400 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | |||||||| ||||| |||| || || | Sbjct 2802401 TGTCGATGGTGTCGGAGGACTCGACTTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTCA 2802460 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 2802461 CGAAGATCTGCAT 2802473 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| ||||||||| |||| ||||||||||||||||| || Sbjct 2802561 CTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGCCCGTCCTCGAGCTGCTTGCCGGCAAA 2802620 Query 46462 TATCAAGCGCTGCTGGTCGG 46481 || | ||||||||||||| Sbjct 2802621 GATGAGACGCTGCTGGTCGG 2802640 >seq1 Length=4606855 Score = 140 bits (154), Expect = 4e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||||||||| || || || |||| || ||||||||||||||||| Sbjct 1903724 CTCCTTCTGGATATTGTAGTCGGAAAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAA 1903665 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| || |||||||| | ||| | || ||| |||||| |||||| ||| | | Sbjct 1903664 GATCAGACGTTGCTGGTCAGGCGGGATGCCCTCTTTGTCCTGAATCTTCGCCTTAACATT 1903605 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| ||| || || || | ||||| || |||||||| || || || || Sbjct 1903604 ATCGATGGTGTCGGACGACTCGACCTCAAGAGTGATAGTCTTGCCCGTGAGGGTCTTGAC 1903545 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 1903544 AAAGATTTGCAT 1903533 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | |||||| || || || | ||| |||||||||||| ||||| || || Sbjct 1904265 CCTCCCCGCAGACGCAAGACAAGGTGAAGTGTCGACTCCTTTTGGATGTTGTAATCCGAG 1904206 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || |||||||||||||| ||||| |||| || |||||||| | || Sbjct 1904205 AGAGTACGACCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCAGGTGGG 1904146 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | || |||||||||| |||||| ||| | ||| | | | || || || || || Sbjct 1904145 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCA-CGTTGTCGATGGTATCAGAAGACTCGAC 1904087 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||| || ||||| || ||||| || || || || |||||| Sbjct 1904086 CTCCAGCGTGATCGTCTTGCCAGTAAGCGTCTTCACGAAAATCTGCATT 1904038 Score = 125 bits (138), Expect = 8e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| ||||| |||||||| || || ||||| |||| || | |||||| || Sbjct 1904463 GTGCTCTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCCC 1904404 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| || | |||||||||||| | ||| | | |||||||||| |||||| ||| Sbjct 1904403 GCGAAGATGAGGCGCTGCTGGTCAGGCGGAATACCCTCCTTGTCCTGAATCTTCGCCTTC 1904344 Query 46517 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | ||| | | | |||||| || || || |||| |||||| || |||||||| || || Sbjct 1904343 A-CGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCCGTGAGGGT 1904285 Query 46576 TTTAACAAAGATTTGCAT 46593 || || || || ||||| Sbjct 1904284 CTTGACGAAAATCTGCAT 1904267 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| ||||||||||| |||| |||||||||||||| ||||| Sbjct 1903496 CTCCTTCTGGATGTTGTAGTCCGATAGAGTGCGACCGTCCTCGAGCTGCTTGCCTGCGAA 1903437 Query 46462 TATCAAGCGCTGCTGGTCGG 46481 || | ||||||||| |||| Sbjct 1903436 GATAAGGCGCTGCTGATCGG 1903417 >seq6 Length=2725691 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| ||||| ||||||||| || ||||| | || || Sbjct 356633 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCATCCTC 356692 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 |||||||||||| || || |||| |||||||||||||| Sbjct 356693 GAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGG 356730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237297785120