Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 306 4e-78 seq1 132 5e-26 seq3 123 2e-23 seq6 82.4 8e-11 >seq2 Length=3722621 Score = 306 bits (338), Expect = 4e-78 Identities = 449/631 (71%), Gaps = 7/631 (1%) Strand=Plus/Plus Query 132814 TGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGC 132873 |||||||| ||||| || || |||| || | |||||| | | | ||||| | | Sbjct 2460660 TGCTCGATCGCGACAGCCTCCGTGATAATCTTGCTAACGACTTCGGGGTGCGGCCTTCTC 2460719 Query 132874 ACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATG 132933 | ||| |||| | |||||| ||||||||| |||| |||||||| | || ||| Sbjct 2460720 TTGAGATGACTGAAGAGCAAGCACGCAAAGTCGGTGTGCATACCCTCGTCGCGCGAGATG 2460779 Query 132934 AGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCG 132993 || ||||| |||||| | |||||||| | |||||| || |||||||| || || | Sbjct 2460780 AGCTCGTTCGAGAAAGTGAGACCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATAGAC 2460839 Query 132994 GCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCG 133053 ||||| || || ||||||| |||||||| || ||||| || || ||||| || || Sbjct 2460840 GCGAAGGAACCAGAGAAGAAGATACCCTCGACAGCAGCGAAGGCGACAAGGCGTTCCGCG 2460899 Query 133054 AACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCAC 133113 || | || | ||| | ||||||||| || ||||| |||||||| | |||| ||| Sbjct 2460900 AAAGCGGAATTCTTGTCAGAGATCCAGCGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAA 2460959 Query 133114 GGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGG 133171 || ||||| |||||||||| ||| | | | | | | || || || | | ||||| Sbjct 2460960 GGGATCGTCTCGATGGCGT-CAA-AGAGGTACTCACGCTGCCTGGGGTCCTTGATGTAGG 2461017 Query 133172 TGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGT 133231 | ||||||||| || || | || || || | ||||||||| |||||| ||||||| Sbjct 2461018 TATCGATGAGGAGGGAGTAGGTCTCGGAATGGATGTTCTCCATCATGATTTGGAAGCCGT 2461077 Query 133232 AAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGT 133291 | || || || |||||| | |||| || || | | |||||||||||| || || |||| Sbjct 2461078 AGAAACAGCGGGCCTCGGCGGCCTGGACCTCGTTGGAGAAACGCTCGACAAGGTTCTCGT 2461137 Query 133292 TGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC---T 133348 ||||||||||||| ||||||||| ||||| || || || || |||||||||| | Sbjct 2461138 TGACGATGCCGTCCGAGGCGGCGAAGAAGGCAAGGACATGGGAGACGAAATGGCGCTCAT 2461197 Query 133349 CGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGG 133408 |||||| | | | | |||||| | |||||||| || |||| |||||| | | Sbjct 2461198 CGTTGTTGAGCCTGTTGTTCCAGTCATGGAGATCCTTGGAAAGATCCATCTCCTCAGCAG 2461257 Query 133409 TCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 |||| || || ||||| || || |||||||| Sbjct 2461258 TCCAGAAAGAAGCCTCTGCCTTCTTGTACAT 2461288 Score = 251 bits (278), Expect = 7e-62 Identities = 397/566 (70%), Gaps = 7/566 (1%) Strand=Plus/Minus Query 132879 ATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTC 132938 ||||| ||||| | ||||| |||||| |||| |||||| || | || ||||| || Sbjct 2463245 ATGCTGGAACAGGAGACAAGCGAAGTCGGTGTGCATGCCCTCATCACGCGAGATGAGCTC 2463186 Query 132939 GTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAA 132998 ||| ||| |||||||||||||| || || || || |||||||| || || | ||| || Sbjct 2463185 GTTCGAGAACGTCAAGCCGGGCATCAGCCCACGCTTCTTGAGCCAGAAGATTGAGGCAAA 2463126 Query 132999 ACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGT 133058 || || || ||||| | |||||| || || ||||| || ||||| ||||| ||||| Sbjct 2463125 ACACCCGGAGAAGAATATGCCCTCTACAGCGGCGAAGGCGACCAGCCGCTCAGCGAACAC 2463066 Query 133059 GGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCAT 133118 || | | || |||||||| | ||||| |||||||| | |||| ||| || || Sbjct 2463065 GGACTGGTCATCAGCTATCCAGCGTAATGCCCAATCGGCCTTCTTCTTGATGCAGGGTAT 2463006 Query 133119 CGTTTCGATGGCGTTCAACA--AACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCG 133176 || |||||||||| || | |||| |||| || | | | | ||| ||||| Sbjct 2463005 AGTCTCGATGGCGTCGAAGAGGAACG--TCCTCTCGTCTGGGTCCCTGATGTAAGTGTCA 2462948 Query 133177 ATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAG 133236 ||||| || || | || ||||| ||||| || || ||| || ||||| || ||| Sbjct 2462947 ATGAGAAGGGAGTAGGTCTCGGAGTGGACGTTTTCGATCATGATCTGGAAGCCATAGAAG 2462888 Query 133237 CACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACG 133296 || ||||||||| | |||| || || | || || |||||||| || || ||||||||| Sbjct 2462887 CATCGCGCCTCGGCGGCCTGAACCTCGTTAGAAAACCGCTCGACGAGGTTCTCGTTGACG 2462828 Query 133297 ATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTC- 133355 || ||||| ||| || ||||||||||| |||| || ||| || |||||| | || Sbjct 2462827 ATACCGTCCGAGGCCGCAAAAAAGGCCAGGACGTAGGAGAGGAAGTGACGCTCGCTATCT 2462768 Query 133356 --GTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAA 133413 | | | | ||||||| | | || | || ||||| | ||| ||||| ||||| Sbjct 2462767 GTGAGCTTCCCATTCCAGTCGGGAATATCATGCGAGAGGTCGATCTCTTCGACCGTCCAG 2462708 Query 133414 AACGACGCCTCGGCTTTTTTGTACAT 133439 || ||||| | ||| |||||||| Sbjct 2462707 AAGGACGCTTGTGCTCGCTTGTACAT 2462682 >seq1 Length=4606855 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||||||||| || ||||| | || |||||| | || Sbjct 1903533 ATGCAAATCTTTGTCAAGACCCTCACGGGCAAGACTATCACTCTTGAGGTCGAGTCGTCC 1903592 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | |||| | || || | ||||||||||| | ||||||| ||||| Sbjct 1903593 GACACCATCGATAATGTTAAGGCGAAGATTCAGGACAAAGAGGGCA-TCCCGCCTGACCA 1903651 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || || | ||| ||||| ||||| || |||| || ||||| ||||||||| Sbjct 1903652 GCAACGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACCCTTTCCGACTACAA 1903711 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | ||||| |||||||| || ||| Sbjct 1903712 TATCCAGAAGGAGTCAACGCTTCATTTGGTCCTTCGT 1903748 Score = 122 bits (134), Expect = 9e-23 Identities = 153/205 (75%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || ||||| | || |||||| || | Sbjct 1904267 ATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTGGAGGTCGAGTCCTCG 1904326 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||| ||||| ||||| | ||||| Sbjct 1904327 GACACGATCGACAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCGCCTGACCA 1904385 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | |||||| || ||| |||| |||| ||||| ||| |||||||| Sbjct 1904386 GCAGCGCCTCATCTTCGCGGGGAAGCAGTTGGAGGACGGCCGCACGCTCTCTGACTACAA 1904445 Query 38423 CATCCAAAAGGA-AGCGACGCTGCA 38446 |||||| ||||| ||| ||||| || Sbjct 1904446 CATCCAGAAGGAGAGC-ACGCTCCA 1904469 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || ||||| || ||||| || ||||| | || |||||| | | Sbjct 1904038 AATGCAGATTTTCGTGAAGACGCTTACTGGCAAGACGATCACGCTGGAGGTCGAGTCTTC 1904097 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| | || | || || | ||||| ||||| || || | |||| Sbjct 1904098 TGATACCATCGACAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCACCTGACC 1904156 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || || || | ||| ||||| ||||| || || | || || ||| || |||| Sbjct 1904157 AGCAACGTCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACTCTCTCGGATTACA 1904216 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||| |||| || || | || ||||| || | || || Sbjct 1904217 ACATCCAAAAGGAGTCGACACTTCACCTTGTCTTGCGTCTGCGGGGAGG 1904265 >seq3 Length=3223173 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||||||||| || ||||||||| | || || ||| | | Sbjct 2801909 ATGCAGATCTTCGTCAAGACGCTCACGGGGAAGACCATCACCTTGGAGGTTGAGTCGTCG 2801850 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| ||||| | ||||| Sbjct 2801849 GACACGATCGACAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGTATTCCGCCAGACCA 2801791 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||| ||||| || || | |||||| ||| |||||||| Sbjct 2801790 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGCACGCTCTCGGACTACAA 2801731 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 2801730 CATCCAGAAGGA 2801719 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| |||| |||||| || || Sbjct 2802473 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCCTCC 2802414 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || ||||| || || ||||||| Sbjct 2802413 GACACCATCGACAACG-TGAAGGCGAAGATCCAAGATAAGGAGGGCATCCCGCCCGACCA 2802355 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || |||||||| |||| || || || ||||||||| Sbjct 2802354 GCAGCGTCTTATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGTACTCTTTCCGACTACAA 2802295 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 ||| || ||||| | ||||| || Sbjct 2802294 CATTCAGAAGGAGTCCACGCTCCA 2802271 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| |||||||| ||||| |||||||| || ||||| |||| || ||| | || Sbjct 2802192 ATGCAAATCTTCGTAAAGACGCTGACGGGCAAGACGATCACTCTCGAGGTGGAGTCTTCC 2802133 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || || ||||| || || | ||||| Sbjct 2802132 GACACCATCGACAATGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAG 2802073 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | |||||||| ||| |||| |||| |||||||| ||||||||| Sbjct 2802072 CAGCGCTTGATCTTTGCGGGCAAGCAGTTGGAGGACGGTCGCACCCTGTCTGACTACAAC 2802013 Query 38424 ATCCAAAAGGA 38434 || || ||||| Sbjct 2802012 ATTCAGAAGGA 2802002 >seq6 Length=2725691 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 38349 ATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408 || ||| ||||||| ||||| || || | |||||||| ||||| || || | ||||| Sbjct 356737 ATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGATGGCCGCACG 356678 Query 38409 CTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || | ||||||||||||||| ||||| | || || || ||||||| || Sbjct 356677 CTTAGCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTTCG 356628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171824663040