Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3 123 2e-23 seq1 100 2e-16 >seq3 Length=3223173 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||| |||||||| || | || |||| || ||||| || ||| Sbjct 2801713 GTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGCCCATCCTCGAGCTGCTTGCCG 2801772 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 || || || || || ||||||||| |||| | ||||||||||| |||||| || Sbjct 2801773 GCGAAGATGAGACGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTCGCCTTC 2801832 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 ||| | |||| || | |||||| || | ||| ||||| || |||||||| ||| Sbjct 2801833 ACGTTGTCGATCGTGTCCGACGACTCAACCTCCAAGGTGATGGTCTTCCCCGTGAGCGTC 2801892 Query 34965 TTCACAAAGATCTGCATA 34982 || || |||||||||||| Sbjct 2801893 TTGACGAAGATCTGCATA 2801910 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| ||||| | || | || |||||||| || ||||| || Sbjct 2802283 TCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCGTCCTCCAGCTGCTTCCCGGCGAAG 2802342 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | |||||||| || |||||| || ||| Sbjct 2802343 ATAAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTATCTTGGATCTTCGCCTTCACGTTG 2802402 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || |||| ||| ||||| || || || | |||||||| Sbjct 2802403 TCGATGGTGTCGGAGGACTCGACTTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACG 2802462 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 2802463 AAGATCTGCAT 2802473 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/209 (70%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||||| || ||||||||||| ||||| || ||| | || | || |||| ||| Sbjct 2801989 GTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGGGTGCGACCGTCCTCCAACTG 2802048 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || || ||||| || | || |||||||| | || | |||||||| || ||||| Sbjct 2802049 CTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTT 2802108 Query 34898 CTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 | ||||| || | ||||| || | ||| || |||| || || || || | Sbjct 2802109 CGCCTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCGAGAGTGATCGTCTTGC 2802164 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || ||||| || ||||| |||||| Sbjct 2802165 CCGTCAGCGTCTTTACGAAGATTTGCATA 2802193 >seq1 Length=4606855 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 34772 AACCAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCAT 34830 ||||||| || | ||||| || ||||| ||||| ||||| || || | || | || | Sbjct 1904477 AACCAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCGTCCT 1904418 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 ||| ||| || || || || || || || |||||||| |||| | ||||||||||| Sbjct 1904417 CCAACTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCAGGCGGAATACCCTCCTTGTCCT 1904358 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||||| || ||| | |||| || || ||| || || | || || || | Sbjct 1904357 GAATCTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCT 1904298 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | |||||||| ||||| || || ||||||||| Sbjct 1904297 TGCCCGTGAGGGTCTTGACGAAAATCTGCATA 1904266 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| || || ||||| || || ||||| |||||| | || | || || Sbjct 1903741 ACCAAATGAAGCGTTGACTCCTTCTGGATATTGTAGTCGGAAAGGGTACGACCGTCCTCA 1903682 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || ||||||||||| |||| | ||||| ||||| | Sbjct 1903681 AGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCAGGCGGGATGCCCTCTTTGTCCTGA 1903622 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| || || || ||||||| || | ||| || || | || || || Sbjct 1903621 ATCTTCGCCTTAAC--AT--TATCGATGGTGTCGGACGACTCGACCTCAAGAGTGATAGT 1903566 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || |||||||| ||||| |||||||| |||||| Sbjct 1903565 CTTGCCCGTGAGGGTCTTGACAAAGATTTGCATA 1903532 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||| || | ||| || | ||||| ||| || || || ||||| || ||||| Sbjct 1904265 CCTCCCCGCAGACGCAAGACAAGGTGAAGTGTCGACTCCTTTTGGATGTTGTAATCCGAG 1904206 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| || || || || || || ||||||||||| | || Sbjct 1904205 AGAGTACGACCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCAGGTGGG 1904146 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||||| || ||| | || | ||| | ||| || Sbjct 1904145 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATGGTATCAGAAGACTCGACC 1904086 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || || || || || || || |||||||| || |||||||| Sbjct 1904085 TCCAGCGTGATCGTCTTGCCAGTAAGCGTCTTCACGAAAATCTGCAT 1904039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632982790368