Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3 105 5e-18 seq1 105 5e-18 >seq3 Length=3223173 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || |||||||| || ||||| ||||| ||||| || | ||| |||| ||||||||| Sbjct 2801990 TGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGGGTGCGACCGTCCTCCAACTGC 2802049 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| |||| ||||| || || | || | ||||||||| || ||||| Sbjct 2802050 TTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTC 2802109 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || || | ||||||||| | || ||||| || |||||| Sbjct 2802110 GCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGAGTGATCGTCTTGCCCGTC 2802169 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || ||||| || || ||||| Sbjct 2802170 AGCGTCTTTACGAAGATTTGCAT 2802192 >seq1 Length=4606855 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||||||||| || || || ||||| ||||| || | || |||| ||||||||| Sbjct 1904469 TGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCGTCCTCCAACTGC 1904410 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || || || ||||| || || | |||| ||||||||||| |||||| Sbjct 1904409 TTCCCCGCGAAGATGAGGCGCTGCTGGTCAGGCGGAATACCCTCCTTGTCCTGAATCTTC 1904350 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | || || | ||| ||||||| ||| ||||| || ||||| Sbjct 1904349 GCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCCGTG 1904290 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || ||||||||||| Sbjct 1904289 AGGGTCTTGACGAAAATCTGCAT 1904267 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||| || ||||| || | || || || ||| ||||| || |||||||| || Sbjct 1904265 CCTCCCCGCAGACGCAAGACAAGGTGAAGTGTCGACTCCTTTTGGATGTTGTAATCCGAG 1904206 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || || | |||||| || || || ||||| || || || || | || Sbjct 1904205 AGAGTACGACCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCAGGTGGG 1904146 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||| || || | | | || || | ||| ||| Sbjct 1904145 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATGGTATCAGAAGACTCGACC 1904086 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||| ||||| || || || | || || || ||||||||||| Sbjct 1904085 TCCAGCGTGATCGTCTTGCCAGTAAGCGTCTTCACGAAAATCTGCAT 1904039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936875742388