Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 168 1e-36 seq4 141 2e-28 >seq2 Length=3722621 Score = 168 bits (186), Expect = 1e-36 Identities = 391/576 (68%), Gaps = 19/576 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || |||||| || || ||||| ||||| Sbjct 2461297 ATCTGGCAAATGTACAAGAAGGCAGAGGCTTCTTTCTGGACTGCTGAGGAGATGGATCTT 2461238 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 ||||||| | | | |||| || |||| | ||| || |||| ||||| || Sbjct 2461237 TCCAAGGATCTCCATGACTGGAACAACAGGCTCAA--CAACGATGAGCGCCATTTCGTCT 2461180 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 | || | || ||||| || ||||| || || || || |||||||| || |||| Sbjct 2461179 CCCATGTCCTTGCCTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACCTTGTCGAGC 2461120 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | ||| ||| || || ||| || |||||| ||||||||||| ||||| || | Sbjct 2461119 GTTTCTCCAACGAGGTCCAGGCCGCCGAGGCCCGCTGTTTCTACGGCTTCCAAATCATGA 2461060 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTC 25770 | || || | || || ||| || || || | ||| || ||||| | ||| | Sbjct 2461059 TGGAGAACATCCATTCCGAGACCTACTCCCTCCTCATCGAT-ACCTACATCAAGGACCCC 2461001 Query 25771 --GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 || | | ||| | || |||| ||||||||| || || ||||||||| ||||| Sbjct 2461000 AGGCAGCGTGAGTAC--CTCTTTGACGCCATCGAGACGATCCCTTGCATCAAGAAGAAGG 2460943 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG-TTTGGCG-AGCGGCTGGT 25886 | |||||| | |||||| | | || || | || ||| ||| | || || || Sbjct 2460942 CCGACTGGGCCCTCCGCTGGATCT-CTGACA-AGAATTCCGCTTTCGCGGAACGCCTTGT 2460885 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946 ||||| |||||||| ||||| ||||| ||| ||||| || ||| | ||||||||||| Sbjct 2460884 CGCCTTCGCTGCTGTCGAGGGTATCTTCTTCTCTGGTTCCTTCGCGTCTATCTTCTGGCT 2460825 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACG 26005 |||| || || |||||||| || ||||| || |||||||||||| | |||| Sbjct 2460824 CAAGAAGCGCGGCTTGATGCCCGGTCTC-ACTTTCTCGAACGAGCTCATCTCGCGCGACG 2460766 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||||| | |||| || ||||| ||| |||||| || Sbjct 2460765 AGGGTATGCACACCGACTTTGCGTGCTTGCTCTTCA 2460730 Score = 163 bits (180), Expect = 5e-35 Identities = 441/657 (67%), Gaps = 26/657 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| | ||||||||| || ||| || |||||| | ||||||||| || || Sbjct 2462673 ATATGGCAAATGTACAAGCGAGCACAAGCGTCCTTCTGGACGGTCGAAGAGATCGACCTC 2462732 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGA---CGAGCAGCATTTTCTCAAG 25593 | | || || || |||| | | || ||| ||||| || || ||| Sbjct 2462733 TCGCATGATATTCCCGACTGGAATGGGAAGCTCACAGATAGCGAGCGTCACTTCCTCTCC 2462792 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| |||| || ||||| ||||| || ||||| || |||||||| || |||| | Sbjct 2462793 TACGTCCTGGCCTTTTTTGCGGCCTCGGACGGTATCGTCAACGAGAACCTCGTCGAGCGG 2462852 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 || | | || || ||| || ||||| || ||||| || |||||||| ||| Sbjct 2462853 TTTTCTAACGAGGTTCAGGCCGCCGAGGCGCGATGCTTCTATGGCTTCCAGATCATGATC 2462912 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTC 25770 ||||| || ||||| ||| || || ||||| || || ||||| | ||| Sbjct 2462913 GAAAACGTCCACTCCGAGACCTACTCC---CTTCTCATTGACACTTACATCAGGGACCCA 2462969 Query 25771 GCCGAGAGA--GATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | |||||| | || || || | ||||||||| |||||| ||||||||| ||||| Sbjct 2462970 GACGAGAGGACGTTC--CTCTTCGACGCCATCGAGACTATACCCTGCATCAAGAAGAAGG 2463027 Query 25829 CGCGGTGGGCCATGAAG-TGGATCAACAGCCAGAGCGCTACGT-TTGGC-GAGCGGCTGG 25885 | || | || ||| | | ||||| | | | || | | ||| || || |||||||||| Sbjct 2463028 C-CGATTGGGCATTACGCTGGAT-AGCTGAT-GACCAGTCCGTGTTCGCTGAGCGGCTGG 2463084 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGC 25945 | ||||| || ||||| |||||||| || ||| ||| | ||||| | |||||||||| Sbjct 2463085 TCGCCTTCGCCGCTGTAGAGGGCATATTCTTCTCCGGGTGTTTTGCCTCAATCTTCTGGC 2463144 Query 25946 TCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005 ||||| || ||| |||||||| || || || |||||||||||| | || | Sbjct 2463145 TCAAGAAGCGTGGGCTGATGCCCGGCTTGACGTTCTCGAACGAGCTCATCTCGCGTGATG 2463204 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAAC-CT 26064 |||| | |||| || || || || || || | | || || || || | | | Sbjct 2463205 AGGGCATGCACACCGACTTCGCTTGTCTCCTGT--TCCAGCATCTCCGTCGACGACCACA 2463262 Query 26065 TCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 || |||| ||| || || ||||||| ||||| || |||||||||||||| || Sbjct 2463263 TC-CAAGCAGA--GTTGCCAAGATCATCACCGAGGCCGTCGAGATCGAGAAGGAATT 2463316 >seq4 Length=2972551 Score = 141 bits (156), Expect = 2e-28 Identities = 179/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 222031 GACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTG 222090 ||| | || |||||| || || |||||||| ||||| | ||||| || | || || Sbjct 1423588 GACGCGCTTCATGAACAGATCGGGGATCCAAAGCGCGTAGAAGAGGTCACGGGCTCGAAC 1423647 Query 222091 CTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGG 222150 ||||||| ||||| ||| || | ||| || | ||||| || ||||| |||||||| || Sbjct 1423648 CTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGATGAACTCGAAGATGTCGGCGTGCCAGGG 1423707 Query 222151 CTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTC 222210 || || |||| ||| | ||||| || |||||||||||||| ||||| || || | | Sbjct 1423708 TTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTTGCCACCTTGATCGACATACCGCGC 1423767 Query 222211 CAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTT 222270 ||||| | ||| || || | || || | ||||||||| ||||||||||||| Sbjct 1423768 GGTAGCGTCGTAGACACGGAGCATAGGAACAATTCCGTTGGAGTAACCGTTGGTGCCCGC 1423827 Query 222271 AATGTA 222276 |||||| Sbjct 1423828 AATGTA 1423833 Score = 87.8 bits (96), Expect = 3e-12 Identities = 184/264 (70%), Gaps = 8/264 (3%) Strand=Plus/Plus Query 221354 GACACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCG-GCCTGGGCGCAAGA 221412 ||| | ||||| || ||||| | |||||||||||| | |||| | ||| | ||| Sbjct 1422882 GACGCGGGACTACCCTCGTATGTCTCGTAGGGACCAT-CAGTCTGTGCCATCTCACAACT 1422940 Query 221413 CTGCGTC-AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCC 221470 ||| || | ||| ||||||||||| ||||| ||||| | ||||| || | | ||| Sbjct 1422941 -TGCCTCGACGGCGGCGTGGTAGATTGTCTCGGAGATCTGCAGATTGAG-CTTTCGCGCC 1422998 Query 221471 TCGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCG 221530 ||| ||| || |||||||| ||| | ||| |||| || || ||||| || || Sbjct 1422999 TCGATAGAGTCAAACGGCATACGGAGCGCCATGAAGGCGTCTGCGAGACCCTGCACACCA 1423058 Query 221531 ATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGC-CGCTTCTGGCACGGGATAAAAGTT 221589 || |||||||| | || | | |||| | |||||| || || || | || || |||| Sbjct 1423059 ATGCCGATGGGACGATGGCGCATGTTCG-AGCGGCGGGCCTCGGGAATCGGGTAGTAGTT 1423117 Query 221590 GACGTCGATCAGATTGTTGAGGTT 221613 | ||||||| | ||||||||| Sbjct 1423118 GGCGTCGATAATGCGGTTGAGGTT 1423141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842988752640