Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1 104 4e-17 seq3 91.5 3e-13 >seq1 Length=4606855 Score = 104 bits (114), Expect = 4e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || ||||| ||||| ||||| | | ||| || | || || || |||||||| | | | Sbjct 1903942 ATGTTATAATCGGACAACGTGCGACCATCCTCAAGCTGCTTCCCAGCAAAAATGAGGCGC 1903883 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||||||||| || ||||| || ||||| || || | || | || || || Sbjct 1903882 TGCTGATCAGGAGGGATCCCTTCCTTGTCTTGGATCTTTGCCTTAACGTTGTCGATCGTG 1903823 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || |||||||| || || ||||| ||||| || ||||| | ||| || || || |||||| Sbjct 1903822 TCCGAAGACTCGACCTCGAGAGTGATAGTCTTTCCTGTCAACGTCTTCACGAAAATTTGC 1903763 Query 193359 AT 193360 || Sbjct 1903762 AT 1903761 >seq3 Length=3223173 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || ||||| || | || | | || || || || || || ||||| || || | Sbjct 2802010 AATGTTGTAGTCAGACAGGGTGCGACCGTCCTCCAACTGCTTGCCCGCAAAGATCAAGCG 2802069 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| || |||||||| || || || ||||| || || || | || | ||| || || Sbjct 2802070 CTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTCGCCTTGACATTGTCGATGGT 2802129 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||||||||||| || || ||||| || || || || || ||||| ||||| || ||||| Sbjct 2802130 GTCGGAAGACTCCACCTCGAGAGTGATCGTCTTGCCCGTCAGCGTCTTTACGAAGATTTG 2802189 Query 193358 CAT 193360 ||| Sbjct 2802190 CAT 2802192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899652645673920