Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2 179 6e-39 seq4 132 8e-25 seq12 107 3e-17 >seq2 Length=3722621 Score = 179 bits (198), Expect = 6e-39 Identities = 221/293 (75%), Gaps = 13/293 (4%) Strand=Plus/Minus Query 794379 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAA 794435 ||||||||| || || |||||||||||||| ||||| |||| |||| || ||||| Sbjct 2463170 GCCGGGCATCAGCCCACGCTTCTTGAGCCAGAAGATTGAGGCA---AAACACCCGGAGAA 2463114 Query 794436 AAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTC 794495 || |||||||| || ||||| ||| |||| |||||||| || || | | || | || Sbjct 2463113 GAATATGCCCTCTACAGCGGCGAAGGCGACCAGCCGCTCAGCGAACACGGACTGGTCATC 2463054 Query 794496 TTTGTTGATCCA-CTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGA 794554 | | ||||| | | || ||||| || ||||| ||| | | |||| | || |||| Sbjct 2463053 A--GCT-ATCCAGCGTAAT-GCCCAATCGGCCTTCTTCTTGATGCAGGGTATAGTCTCGA 2462998 Query 794555 TGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGC 794613 ||||| |||||| ||||| |||| | |||||| ||| ||| ||||| ||||| || Sbjct 2462997 TGGCGTCGAAGAGGAACGTCCT-CTCGTCTGGGTCCCTGATGTAAGTGTCAATGAGAAGG 2462939 Query 794614 GAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||||||||||| ||||||| ||||||||| ||||||||||||||| ||||| Sbjct 2462938 GAGTAGGTCTCGGAGTGGACGTTTTCGATCATGATCTGGAAGCCATAGAAGCA 2462886 Score = 158 bits (174), Expect = 2e-32 Identities = 237/332 (71%), Gaps = 11/332 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 ||| |||||||| ||| | ||||| | |||| ||| |||||||| | |||||||| Sbjct 2460761 ACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAAAGT-GAGACCGGGCATCAAGCCGCGCT 2460819 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||||||||| ||||| | ||| || ||||| ||||| |||||||| || || | Sbjct 2460820 TCTTGAGCCAGAAGATAGACGCGAAGGAACCAGAGAAGAAGATACCCTCGACAGCAGCGA 2460879 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTT---GATCCACTTCATCG 794515 || |||| || || || || |||| | | |||| || |||||| | | Sbjct 2460880 AGGCGACAAGGCGTTCCGCGAAAGCG-----GAATTCTT-GTCAGAGATCCAGCGGAGGG 2460933 Query 794516 CCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 794575 |||| || ||||| ||| | | | || | ||| ||||||||| |||||||| || Sbjct 2460934 CCCAGTCGGCCTTCTTCTTGATGCAAGGGATCGTCTCGATGGCGTCAAAGAGGTACTCAC 2460993 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 || |||||||||| |||||| ||||||||||| ||||||||||| || ||||||| Sbjct 2460994 GCTGCCTGGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTAGGTCTCGGAATGGATGT 2461053 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 | || || ||| |||||||| || || ||| Sbjct 2461054 TCTCCATCATGATTTGGAAGCCGTAGAAACAG 2461085 Score = 149 bits (164), Expect = 1e-29 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||| | || || ||| ||| |||||| ||||| |||||||||| |||| Sbjct 2460384 ACGCCAGCCTTCGAGTAATCCGACACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGGAGC 2460443 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGC 794012 ||||||| ||||| | ||| ||||| | | |||| ||||||||| |||||| Sbjct 2460444 GAGATCATATCCATGAAGTCGAAGGGGTTTGTCACGCCGTAGGACTTCTCGCAACCGAGC 2460503 Query 794013 GACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATG 794072 | |||||||||||||||| ||||| || ||||| ||||||||||| | ||||||| Sbjct 2460504 GCGACAAGCAGGCGGTCGGCCACGAACTCGATGTATTGGCACATGAGCTTTGAGTTCATG 2460563 Query 794073 CCGATGAGCGCCACGGGCAGCG 794094 || ||||| || ||||| |||| Sbjct 2460564 CCAATGAGTGCAACGGGGAGCG 2460585 Score = 138 bits (152), Expect = 2e-26 Identities = 141/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 793899 GCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 793958 ||||| ||||||||| || || ||||||||||||||||||||||| ||| |||||| Sbjct 2463577 GCCTTCGCATACTCGGAGACACGTTTCTCGAAAAAGTTGGTCTTGCCCTGGAGTGAGATC 2463518 Query 793959 AACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCA 794018 | ||||| | ||||||||| | | ||||||| |||||| ||||| | | Sbjct 2463517 ATATCCATGAAGTCGAACGGGTTAGTTGAATGGTAGTGTTTCTCGTTTCCGAGAGCTACG 2463458 Query 794019 AGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATG 794078 ||||| | ||| |||||||| || ||||| |||||||| | ||| ||||||| |||||| Sbjct 2463457 AGCAGTCTGTCTGCGACGAACTCGATGTATTGGCACATCAAGGCCGCGTTCAGACCGATG 2463398 Query 794079 AGCG 794082 |||| Sbjct 2463397 AGCG 2463394 >seq4 Length=2972551 Score = 132 bits (146), Expect = 8e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 2071795 TCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACG 2071854 ||||| || || || || ||| ||||| ||||| ||||| | ||| |||| | | ||| Sbjct 1423532 TCGTGGAGACCAGGTGCTTCGTTTGGGCAGAAGAGAGACCATTTGCCACCAGACTCGACG 1423591 Query 2071855 CGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCC 2071914 || ||| ||||| ||| |||| || |||| ||||| || || || || |||| Sbjct 1423592 CGCTTCATGAACAGATCGGGGATCCAAAGCGCGTAGAAGAGGTCACGGGCTCGAACCTCC 1423651 Query 2071915 TCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCC 2071974 ||||||||||||||||| |||||||| | |||| || |||||||||||| || || Sbjct 1423652 TCCTTGCCGTGGTTCTTGCGCAGGTCGATGAACTCGAAGATGTCGGCGTGCCAGGGTTCG 1423711 Query 2071975 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 |||||| ||| || ||||| ||||||| ||| || Sbjct 1423712 AGGTAGATGGCGAACGCGCCAGGGCGCTTGTTGCCACC 1423749 Score = 111 bits (122), Expect = 2e-18 Identities = 107/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 2069617 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTG-ATGACCTCGCACGCCTC 2069675 || ||||| | ||||||||| || || ||||||||||| ||| ||| |||| | ||| Sbjct 1422666 AACTCGCCAGCGAGCACGCGACGGGTATAGATGTTGCTGGTGTATG-GCTCGAAGCACTC 1422724 Query 2069676 GGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTT 2069735 | |||||||||| |||||||| || | ||| || |||||| |||| ||||| |||||||| Sbjct 1422725 GTTGTTGCCCAGAATCTGCGATGTGGAGGCGGTAGGCATGGGCGCGACGAGGAGCGAGTT 1422784 Query 2069736 GCGCAGGCCGTACTG 2069750 | ||||||| ||| Sbjct 1422785 CCTAAGGCCGTGCTG 1422799 Score = 105 bits (116), Expect = 1e-16 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2070133 AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGC 2070192 || ||||| || || |||||||| || | ||| || || || ||||||| ||||||| | Sbjct 1423032 AAGGCGTCTGCGAGACCCTGCACACCAATGCCGATGGGACGATGGCGCATGTTCGAGCGG 1423091 Query 2070193 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTG 2070243 ||||||||||| | |||||||| |||| |||||| | ||||||||||||| Sbjct 1423092 CGGGCCTCGGGAATCGGGTAGTAGTTGGCGTCGATAATGCGGTTGAGGTTG 1423142 >seq12 Length=2030760 Score = 107 bits (118), Expect = 3e-17 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1485603 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGA 1485662 ||| ||||| ||||||| |||| || ||||||||||||||||||| ||| | ||||| Sbjct 1396016 GGCTTCGGTCGCGATGCGTTCGAAGATATCGTTGACAAACGAGTTCAGGATTGCCATCGC 1396075 Query 1485663 TTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||| || || |||||||||||||||||||||||| Sbjct 1396076 CTTGTTGGAAATACCAGTGTCGGGGTGCACCTGCTTGAGCAC 1396117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916229805568484