Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1 136 8e-27 seq3 111 3e-19 >seq1 Length=4606855 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || ||||| || | ||| || || || || || || || || ||||| | Sbjct 1904267 TACCTCCCCGCAGACGCAAGACAAGGTGAAGTGTCGACTCCTTTTGGATGTTGTAATCCG 1904208 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| || || || || || ||||| ||||| || | ||| || || || | Sbjct 1904207 AGAGAGTACGACCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCAGGTG 1904148 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || |||||||| || || || || || || |||||| || || | Sbjct 1904147 GGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATGGTATCAGAAGACTCGA 1904088 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||| || ||||||||||| || | |||||| || || ||||||||| Sbjct 1904087 CCTCCAGCGTGATCGTCTTGCCAGTAAGCGTCTTCACGAAAATCTGCATT 1904038 Score = 123 bits (136), Expect = 5e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || ||||| || |||||||| || | | | ||| || || || || || |||||||| Sbjct 1903951 TCCTTCTGGATGTTATAATCGGACAACGTGCGACCATCCTCAAGCTGCTTCCCAGCAAAA 1903892 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || || | || ||||| ||||| || |||||||| ||||| |||||||| || || || Sbjct 1903891 ATGAGGCGCTGCTGATCAGGAGGGATCCCTTCCTTGTCTTGGATCTTTGCCTTAACGTTG 1903832 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 || ||||| || || || || || | ||| || ||||| |||||||||||||| || Sbjct 1903831 TCGATCGTGTCCGAAGACTCGACCTCGAGAGTGATAGTCTTTCCTGTCAACGTCTTCACG 1903772 Query 82800 AATATCTGCAT 82810 || || ||||| Sbjct 1903771 AAAATTTGCAT 1903761 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || ||||| || || || ||||| || | | ||||| || | || || || || ||| Sbjct 1904457 TCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCCCGCGAAG 1904398 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || || | || || || || || || || ||||| || |||||||| || || || || Sbjct 1904397 ATGAGGCGCTGCTGGTCAGGCGGAATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTTG 1904338 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 || ||||| || | || || |||| || ||||||||||| || | ||||| || Sbjct 1904337 TCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACG 1904278 Query 82800 AATATCTGCAT 82810 || |||||||| Sbjct 1904277 AAAATCTGCAT 1904267 >seq3 Length=3223173 Score = 111 bits (122), Expect = 3e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || ||||| || || || ||||| || | | |||||| || | || || || |||||| Sbjct 2802002 TCCTTCTGAATGTTGTAGTCAGACAGGGTGCGACCGTCCTCCAACTGCTTGCCCGCAAAG 2802061 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || | | || || || ||||| || || |||||||| || ||||| || || ||||| Sbjct 2802062 ATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTCGCCTTGACATTG 2802121 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 || || || || || || || || | ||| ||||||||||| |||| ||||||||| Sbjct 2802122 TCGATGGTGTCGGAAGACTCCACCTCGAGAGTGATCGTCTTGCCCGTCAGCGTCTTTACG 2802181 Query 82800 AATATCTGCAT 82810 || || ||||| Sbjct 2802182 AAGATTTGCAT 2802192 Score = 102 bits (112), Expect = 2e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||| || || || || ||||| || || || || || ||| | | ||||| || || || Sbjct 2802270 GTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCGTCCTCCAGCTG 2802329 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || || || ||||| || | || || || || || || || ||||||||||| ||||| Sbjct 2802330 CTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTATCTTGGATCTT 2802389 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || || || || || || || | || ||||| | || || |||||||| || Sbjct 2802390 CGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACTTCGAGGGTGATGGTCTTGCCGGT 2802449 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 ||| ||||| || || |||||||| Sbjct 2802450 CAAGGTCTTCACGAAGATCTGCAT 2802473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981825237572884