Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4 239 4e-58 seq3 131 2e-25 seq1 120 3e-22 seq2 98.7 1e-15 seq6 89.7 5e-13 >seq4 Length=2972551 Score = 239 bits (264), Expect = 4e-58 Identities = 608/915 (66%), Gaps = 10/915 (1%) Strand=Plus/Plus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 ||||| |||||||||||||||||||| || ||| | ||| |||| ||||| | Sbjct 1422345 GTGCGGAGATAGTACATGCCCGTCTTCAGACCCTTCTTCCAGCCGTAAAAGTGCATGCTC 1422404 Query 148011 GACATGAGCGTGTACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCAATG 148070 | || || || |||||| ||| | || | |||||| |||| ||| Sbjct 1422405 GTCAACTGCCCGTTCGTCGGCGCTTGCAGGTGGACGTTGAGCGACTGCGACTGGCAGATG 1422464 Query 148071 AACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCA-TCTCCCAGGCCGT 148129 || ||||||||||| ||||| | |||| || | || | | | |||||||| | || Sbjct 1422465 AATGCGCCACGGTCCGCGGCGAGGTCAA-GAACCTTCTTCTGTGAAATCTCCCAGACGGT 1422523 Query 148130 CTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGGTG 148189 |||||| | | ||||| | ||||| || ||||||| ||| | || ||| || Sbjct 1422524 CTTGTAGATCGCCTTGACGTCGTCGGGGATAATGTCGATGTTCTGGATGGACCCGTTGTT 1422583 Query 148190 CGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCGAT 148249 || | |||| ||| ||| || || | | ||| |||||||| || || || Sbjct 1422584 GGCGATAATCATATTCTTCATGTCATCGTTCCACAGGCCGAGCTCGACGAGCTCGCGGAG 1422643 Query 148250 CAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCT 148309 || || | ||| ||||| |||||||| ||||||||||| || ||| | |||||| Sbjct 1422644 GAGCCACGGGCACACGACCTGGAACTCGCCAGCGAGCACGCGACGGGTATAGATGTTGCT 1422703 Query 148310 CGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCAT 148369 || | || || || ||||||||||||||| |||||||| || | || || ||||| Sbjct 1422704 GGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGATGTGGAGGCGGTAGGCAT 1422763 Query 148370 GTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGC 148429 | ||| || || |||||||| | | ||| | | | ||| ||| ||| || Sbjct 1422764 GGGCGCGACGAGGAGCGAGTTCCTAAGGCCGTGCTGAGCGACCTTGGCCTTGAGACTGGC 1422823 Query 148430 CCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCT 148489 ||||||||| || || || || ||| ||| | |||||| || || ||| || Sbjct 1422824 CCAGTCCCAAAGATCCGTAGGAGTGACGCCCCATAGGTCGTATTGGAGCTGGCCCTGGGA 1422883 Query 148490 AGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGC 148549 ||||| || |||||||| | ||| || || | | | |||| || || || || Sbjct 1422884 CGCGGGACTACCCTCGTATGTCTCGTAGGGACCATCAGTCTGTGCCATCTCACAACTTGC 1422943 Query 148550 CTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGC---AGCGCCGCCGA 148606 ||||| ||| ||| ||| || ||||||| || ||| |||||| ||||| ||| Sbjct 1422944 CTCGACGGCGGCGTGGTAGATTGTCTCGGAGATCTGCAGATTGAGCTTTCGCGCC-TCGA 1423002 Query 148607 CTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCAC 148666 | | || |||||||||| ||| || || ||||| || || ||||| || || | Sbjct 1423003 -TAG-AGTCAAACGGCATACGGAGCGCCATGAAGGCGTCTGCGAGACCCTGCACACCAAT 1423060 Query 148667 GCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG-AGCGGATAGTGGTTGC 148725 ||| ||||| || || ||||| ||| |||| || ||| | | ||| |||| |||| Sbjct 1423061 GCCGATGGGACGATGGCGCATGTTCGAGCGGCGGGC-CTCGGGAATCGGGTAGTAGTTGG 1423119 Query 148726 GGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAA 148785 |||||| || || || ||| | || ||||| | || | ||||| | | Sbjct 1423120 CGTCGATAATGCGGTTGAGGTTGAAGGCGACAACCTTGGCAACGGCGTGCAGCTTCTTGA 1423179 Query 148786 AATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGG 148845 | | ||||||| |||| ||||| | | | |||||| || || |||||||| |||| Sbjct 1423180 AGTTGTACTTGCCATCCTCGATGAAGGAGGGAATGGCGATGGATGCAAGATTGCAGACGG 1423239 Query 148846 CCGTCTCATCCGGGG 148860 | |||||||| |||| Sbjct 1423240 CAGTCTCATCGGGGG 1423254 Score = 89.7 bits (98), Expect = 5e-13 Identities = 266/398 (67%), Gaps = 17/398 (4%) Strand=Plus/Plus Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||| ||| |||||| ||| ||||| || |||||| | || || ||||| || | || | Sbjct 1423368 TGCACTTACTGTTGGCCGCATCCTTATAGAGCATGAAAGGACCACCAGTCTCGATTTGGG 1423427 Query 148984 TTTCCACTATGA---ACCGATGCAGGTCCTGCGCGCGCACTTG-CTGCTCGTA-GCGACC 149038 |||| ||| ||| | || | ||| || | | | | || | ||| |||||| Sbjct 1423428 CCTCCAGGATGGCGTACCAAAGC---TTCTGAGC-CTCGATAGTCTTC-CGTGCGCGACC 1423482 Query 149039 CTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACC 149098 ||| ||||||| || || ||| ||| | || || || |||| |||||| Sbjct 1423483 CTCGCGCTCGTACTGCTCGTAGAGTGCCTCAAACTCATCACCCCAGACTTCGTGGAGACC 1423542 Query 149099 GGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAA 149158 || | || ||||| | ||| ||||| ||| | | | ||||||||||| || Sbjct 1423543 AGGTGCTTCGTTTGGGCAGAAGAGAGACCATTTGCCACCAGACTCGACGCGCTTCATGAA 1423602 Query 149159 CAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCA-GTCTTCGGCGCCCA 149217 ||||||||| | ||| |||||||| | |||||| || | || | | || || ||| Sbjct 1423603 CAGATCGGGGATCCAAAGCGCGTAGAAGAGGTCACG-GGCTCGAACCTCCTCCTTGCCGT 1423661 Query 149218 TGTTGCGGCGCAGGTTGA-GCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACC 149276 ||| |||||||| || | || | ||| ||||| |||||||| || || | ||| | Sbjct 1423662 GGTTCTTGCGCAGGTCGATGAACTC-GAAGATGTCGGCGTGCCAGGGTTCGAGGTAGATG 1423720 Query 149277 GCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGAC 149311 |||| |||||| |||| ||||| || || ||||| Sbjct 1423721 GCGAACGCGCCAGGGCGCTTGTTGCCACCTTGATCGAC 1423758 >seq3 Length=3223173 Score = 131 bits (144), Expect = 2e-25 Identities = 152/203 (75%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||| ||| | || ||| |||||| |||||||| | Sbjct 2802277 GTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGT--ACGGCCGTCCTCCAGCTGCTTCC 2802334 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || |||||||||||||| |||||||| ||||| || |||||| || Sbjct 2802335 CGGCGAAGATAAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTATCTTGGATCTTCGCCT 2802394 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||||| || ||| || |||| ||||| ||| |||||||||| | Sbjct 2802395 TCACGTTGTCGATGGTGTCGGAGGACTCGACTTCGAGGGTGATGGTCTTGCCGGTCAAGG 2802454 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || ||||| ||||||||| || Sbjct 2802455 TCTTCACGAAGATCTGCATGCCT 2802477 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||| ||| ||||| || ||||| || || ||| ||| |||||| | |||||||| Sbjct 2801995 GGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGGGTGCGACC-GTCCTCCAACTGCTTGC 2802053 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 |||| | || | ||||||||||| ||||||||||| ||||| || |||||| || Sbjct 2802054 CCGCAAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTCGCCT 2802113 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| |||| |||| || ||||| ||||| | Sbjct 2802114 TGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGAGTGATCGTCTTGCCCGTCAGCG 2802173 Query 133642 TTTTTACGAAAATCTGCAT 133660 | |||||||| || ||||| Sbjct 2802174 TCTTTACGAAGATTTGCAT 2802192 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||| ||| ||||| || ||||| || | |||| | ||||||||||||||||| Sbjct 2801712 GGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGCCCATCCTCGAGCTGCTTGCC 2801771 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||||||||| || || || || |||||||| |||||| ||| Sbjct 2801772 GGCGAAGATGAGACGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTCGCCTT 2801831 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | |||||| | | ||| || || | ||||| ||| || || || || || Sbjct 2801832 CACGTTGTCGATCGTGTCCGACGACTCAACCTCCAAGGTGATGGTCTTCCCCGTGAGCGT 2801891 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 2801892 CTTGACGAAGATCTGCAT 2801909 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||||||| | ||| | |||||||||||||||||| Sbjct 2802555 GGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGCCCGTCCTCGAGCTGCTTGCC 2802614 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGC 133557 || | ||||| |||||||||||||||||||||| Sbjct 2802615 GGCAAAGATGAGACGCTGCTGGTCGGGAGGGATGC 2802649 >seq1 Length=4606855 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || || |||||| || |||| ||| | ||||| |||||||| || || Sbjct 1903952 CTCCTTCTGGATGTTATAATCGGACAACGTGCGACCA-TCCTCAAGCTGCTTCCCAGCAA 1903894 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 ||||||| |||||||| || |||||||| ||||||||||| ||||||| ||| | | Sbjct 1903893 AAATGAGGCGCTGCTGATCAGGAGGGATCCCTTCCTTGTCTTGGATCTTTGCCTTAACGT 1903834 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 || | |||||| | | ||| || |||| |||| || || || |||| || || | Sbjct 1903833 TGTCGATCGTGTCCGAAGACTCGACCTCGAGAGTGATAGTCTTTCCTGTCAACGTCTTCA 1903774 Query 133648 CGAAAATCTGCAT 133660 ||||||| ||||| Sbjct 1903773 CGAAAATTTGCAT 1903761 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTA 133528 ||| ||||| || ||||| || | |||| |||||| | |||||| |||||| | Sbjct 1904458 CTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCCCGCGAA 1904399 Query 133529 AATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTG 133588 ||||| ||||||||||| || || || || |||||||| ||||| ||| | | Sbjct 1904398 GATGAGGCGCTGCTGGTCAGGCGGAATACCCTCCTTGTCCTGAATCTTCGCCTTCACGTT 1904339 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 || | |||||| | || ||| || || | |||| || ||||| || || || || || Sbjct 1904338 GTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCCGTGAGGGTCTTGAC 1904279 Query 133649 GAAAATCTGCAT 133660 |||||||||||| Sbjct 1904278 GAAAATCTGCAT 1904267 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 || ||||| || || || |||||||| | | | | |||| |||||||||||||||| Sbjct 1904235 GTCGACTCCTTTTGGATGTTGTAATC--CGAGAGAGTACGACCATCCTCGAGCTGCTTGC 1904178 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || || |||||||| || |||||||| |||||||| ||||| || Sbjct 1904177 CAGCGAAGATCAGACGTTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCGCCT 1904118 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || || | | ||| || || | |||| || ||||| || || | Sbjct 1904117 TCACGTTGTCGATGGTATCAGAAGACTCGACCTCCAGCGTGATCGTCTTGCCAGTAAGCG 1904058 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 1904057 TCTTCACGAAAATCTGCAT 1904039 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 ||||| | || ||||| ||||| |||||||| ||| | || |||| |||||| | Sbjct 1903738 AAATGAAGCGTTGACTCCTTCTGGATATTGTAGTCGGAAAGGGT--ACGACCGTCCTCAA 1903681 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||||||| ||| | || || || |||||||| || |||||||| || ||||| | Sbjct 1903680 GCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCAGGCGGGATGCCCTCTTTGTCCTGAA 1903621 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | | || | ||||||| | ||| || || | |||| || |||| Sbjct 1903620 TCTTCGCCTTAACATTATCGATGGTGTCGGACGACTCGACCTCAAGAGTGATAGTCTTGC 1903561 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || || || || ||||| Sbjct 1903560 CCGTGAGGGTCTTGACAAAGATTTGCAT 1903533 >seq2 Length=3722621 Score = 98.7 bits (108), Expect = 1e-15 Identities = 167/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 || |||||||||||| ||||||| |||||||||||||| || |||||||| || || Sbjct 2460737 CAAGCACGCAAAGTCGGTGTGCATACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAAAGT 2460796 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 || |||||||| | ||| | |||||| |||| || | || ||| || || || Sbjct 2460797 GAGACCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATAGACGCGAAGGAACCAGAGAA 2460856 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT 120818 ||| | ||||| || || |||||||| | ||| || || || | | ||||| Sbjct 2460857 GAAGATACCCTCGACAGCAGCGAAGGCGACAAGGCGTTCCGCGAAAGCGGAATTCTTGTC 2460916 Query 120819 GTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGC 120878 |||||| | |||||| |||||||| || | ||| || ||| ||||| || Sbjct 2460917 AGAGATCCAGCGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATCGTCTCGATGGC 2460976 Query 120879 GT 120880 || Sbjct 2460977 GT 2460978 >seq6 Length=2725691 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/96 (82%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| |||| | |||| | | | |||||||||||||||| Sbjct 356645 GGTGGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCA-TCCTCGAGCTGCTTGC 356703 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGC 133557 |||| | || || |||||||||||||| ||||||| Sbjct 356704 CCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGC 356739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419857329440