Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 3e-14 seq1 84.2 1e-11 >seq3 Length=3223173 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || |||||||| || || |||||||| || ||||| ||||| | || || | || Sbjct 2801707 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGCCCATCCTCGAGCTGC 2801766 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||| ||| |||| | ||| || ||||| || ||| Sbjct 2801767 TTGCCGGCGAAGATGAGACGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATCTTC 2801826 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| | | ||| | ||||| || || || || | ||||| || || || || Sbjct 2801827 GCCTTCA-CGTTGTCGATCGTGTCCGACGACTCAACCTCCAAGGTGATGGTCTTCCCCGT 2801885 Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750 | ||| || || |||||||||||| Sbjct 2801886 GAGCGTCTTGACGAAGATCTGCATA 2801910 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| ||||| || || || |||| |||| || Sbjct 2802271 TGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCGTCCTCCAGCTGC 2802330 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||| || |||| | || || || || || ||| Sbjct 2802331 TTCCCGGCGAAGATAAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTATCTTGGATCTTC 2802390 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| | | ||| | ||||||| || || || || | ||||| || || || || Sbjct 2802391 GCCTTCA-CGTTGTCGATGGTGTCGGAGGACTCGACTTCGAGGGTGATGGTCTTGCCGGT 2802449 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || || || || ||||||||||| Sbjct 2802450 CAAGGTCTTCACGAAGATCTGCAT 2802473 >seq1 Length=4606855 Score = 84.2 bits (92), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || |||||||| || || ||||| |||||||| | ||||| | || || | || Sbjct 1903963 TGGAGCGTGCTCTCCTTCTGGATGTTATAATCGGACAACGTGCGACCATCCTCAAGCTGC 1903904 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || |||||||| | ||||||||||| | || | ||||| ||||| || || Sbjct 1903903 TTCCCAGCAAAAATGAGGCGCTGCTGATCAGGAGGGATCCCTTCCTTGTCTTGGATCTT- 1903845 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || | ||| | ||| | ||||| || || || || | ||||| || || ||||| Sbjct 1903844 TGCCTTAACGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGAGTGATAGTCTTTCCTGT 1903785 Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750 ||||| || || || || |||||| Sbjct 1903784 CAACGTCTTCACGAAAATTTGCATA 1903760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703375051520