Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1 102 2e-16 seq3 87.8 4e-12 >seq1 Length=4606855 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || |||||||| |||| || || |||||| || |||| Sbjct 1904054 AAGACGCTTACTGGCAAGACGATCACGCTGGAGGTCGAGTCTTCTGATACCATCGACAAC 1904113 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || || || || ||| ||| | || |||||| Sbjct 1904114 GTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAACGTCTGATCTTC 1904173 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || ||||| | ||| | | ||||||||| |||| || ||||| Sbjct 1904174 GCTGGCAAGCAGCTCGAGGATGGTCGTACTCTCTCGGATTACAACATCCAAAAGGAGTCG 1904233 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||||||||| ||| | || || Sbjct 1904234 ACACTTCACCTTGTCTTGCGTCTGCG 1904259 Score = 87.8 bits (96), Expect = 4e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || |||||||| |||| || || || ||| Sbjct 1904270 CAGATTTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTGGAGGTCGAGTCCTCGGAC 1904329 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || ||| ||| ||| || Sbjct 1904330 ACGATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCGCCTGACCAGCAG 1904389 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || ||||||||||| || || | || | | || |||||| || Sbjct 1904390 CGCCTCATCTTCGCGGGGAAGCAGTTGGAGGACGGCCGCACGCTCTCTGACTACAACATC 1904449 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTT 206380 ||||| ||| || || ||||||| || Sbjct 1904450 CAGAAGGAGAGCACGCTCCACCTTGGTT 1904477 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || ||||| || || || |||||| | || || || || ||| Sbjct 1903536 CAAATCTTTGTCAAGACCCTCACGGGCAAGACTATCACTCTTGAGGTCGAGTCGTCCGAC 1903595 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || ||||| || || ||| ||| ||| Sbjct 1903596 ACCATCGATAATGTTAAGGCGAAGATTCAGGACAAAGAGGGCATCCCGCCTGACCAGCAA 1903655 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || || || | || | |||| ||||| || Sbjct 1903656 CGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACCCTTTCCGACTACAATATC 1903715 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| ||||| || ||||| Sbjct 1903716 CAGAAGGAGTCAACGCTTCA 1903735 >seq3 Length=3223173 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| |||||||| || || || ||||| ||||| || || || ||| Sbjct 2801906 CAGATCTTCGTCAAGACGCTCACGGGGAAGACCATCACCTTGGAGGTTGAGTCGTCGGAC 2801847 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| ||| ||| || Sbjct 2801846 ACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGTATTCCGCCAGACCAGCAG 2801787 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || ||||| | || | | || |||||| || Sbjct 2801786 CGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGCACGCTCTCGGACTACAACATC 2801727 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||| || || |||||||| Sbjct 2801726 CAGAAGGAGAGCACCCTCCACCTTGT 2801701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181818437835676