Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2 210 3e-48 seq4 111 2e-18 >seq2 Length=3722621 Score = 210 bits (232), Expect = 3e-48 Identities = 361/511 (71%), Gaps = 20/511 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| || || ||||| || |||||| | || | Sbjct 2461298 GATCTGGCAAATGTAC-AAGAAGGCAGAGGCTTCTTTCTGGACTGCTGAGGAGATGGATC 2461240 Query 1455835 TCGGCGCCGA-CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATC 1455890 | | || | | | ||||| ||| | | |||| |||||||||||| || Sbjct 2461239 TTTCCAAGGATCTCCATG-ACTGGAACAACAGGCTCAACAACGATGAGCGCCATTTCGTC 2461181 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 || ||||| ||||| || ||||||| || |||||||| ||||||||| | || Sbjct 2461180 TCCCATGTCCTTGCCTTCTT-CGCCGCCTCGGACGGCATCGTCAACGAGAACCTTGTCGA 2461122 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 || || || |||||||| | ||||| || | || ||||| ||||| ||| Sbjct 2461121 GCGTTTCTCCAACGAGGTCCAGGCCGCCGAGGCCCGCTGTTTCTACGGCTTCCAAATCAT 2461062 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || |||||||| || || |||||||| ||||| ||||| |||||| |||||||||| Sbjct 2461061 GATGGAGAACATCCATTCCGAGACCTACTCCCTCCTCATCGATACCTACATCAAGGACCC 2461002 Query 1456071 GGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 || || |||||||| ||||||||| ||| | || | | | ||| ||||| Sbjct 2461001 CAGGCAGCGTGAGTACCTCTTTGACGCCATCGAGACGATCCCTTGCATCAAGAAGAAGGC 2460942 Query 1456131 CGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCT 1456186 ||||||||| | |||||| ||||| | || | |||| || || || || Sbjct 2460941 CGACTGGGCCCTCCGCTGGATCTCTGACAAGAA----TTC--CGCTTTCGCGGAACGCCT 2460888 Query 1456187 CGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTT 1456244 |||| ||| || || |||||||| ||||| ||||| || ||| ||| | ||||| | Sbjct 2460887 TGTCGCCTTCGCTGCTGTCGAGGGTATCTTCTTCTCTGGTTCCTTC-GCGTCTATCTTCT 2460829 Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||||||||| | ||||||||||| Sbjct 2460828 GGCTCAAGAAGCGCGGCTTGATGCCCGGTCT 2460798 Score = 188 bits (208), Expect = 1e-41 Identities = 355/506 (70%), Gaps = 16/506 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| |||||||| | || | || | ||||| ||||| | ||| ||| |||||| Sbjct 2462672 GATATGGCAAATGTACAAGCGAGCACAAG-CGTCCTTCTGGACGGTCGAAGAGATCGACC 2462730 Query 1455835 TCGGCGCC-GACACGGTCCACTGG---GTGTCGCTGAGCGACGACGAGCGCCATTTCATC 1455890 || ||| || | | ||||| | | ||| | || |||||| || ||| || Sbjct 2462731 TCT-CGCATGATATTCCCGACTGGAATGGGAAGCTCACAGATAGCGAGCGTCACTTCCTC 2462789 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 ||||||| ||||||||| || ||| || || ||||| ||||||||| | || Sbjct 2462790 TCCTACGTCCTGGCCTTTTTT-GCGGCCTCGGACGGTATCGTCAACGAGAACCTCGTCGA 2462848 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 || ||| || ||||| || | ||||| || | || || || ||||||||| Sbjct 2462849 GCGGTTTTCTAACGAGGTTCAGGCCGCCGAGGCGCGATGCTTCTATGGCTTCCAGATCAT 2462908 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 ||||||||| ||||||| || |||||||| || || || ||||| ||| ||| |||||| Sbjct 2462909 GATCGAAAACGTCCACTCCGAGACCTACTCCCTTCTCATTGACACTTACATCAGGGACCC 2462968 Query 1456071 GGTCGAGAAGGACCA-CCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129 | ||||| |||| |||||| ||||||||| || | || | | | ||| |||| Sbjct 2462969 AGACGAGA-GGACGTTCCTCTTCGACGCCATCGAGACTATACCCTGCATCAAGAAGAAGG 2463027 Query 1456130 CCGACTGGGCGATGAAG-TGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTC 1456187 |||| ||||| || | | ||||| | | || | || | || || |||||||| Sbjct 2463028 CCGATTGGGC-ATTACGCTGGAT-AGCT--GATGACCAGTCCGTGTTCGCTGAGCGGCTG 2463083 Query 1456188 GTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGG 1456246 |||| ||| ||||| || |||||||| || ||||| || |||| | | ||||| ||| Sbjct 2463084 GTCGCCTTCGCCGCTGTAGAGGGCATATTCTTCTCCGGGTGTTTTGCCTCAATCTTCTGG 2463143 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||||||||||| || || |||||||| Sbjct 2463144 CTCAAGAAGCGTGGGCTGATGCCCGG 2463169 Score = 136 bits (150), Expect = 6e-26 Identities = 160/211 (76%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 1456569 CGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTT 1456628 |||| || || || ||||| ||||||||| | | |||||||||||| ||||| || || Sbjct 2460585 CGCTCCCCGTTGCACTCATTGGCATGAACTCAAA-GCTCATGTGCCAATACATCGAGTTC 2460527 Query 1456629 TGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACC 1456688 || |||||||||||||| | |||||||| |||| ||||| |||| | | | |||| Sbjct 2460526 -GTGGCCGACCGCCTGCTTGTCGCGCTCGGTTGCG-AGAAGTCCTACGGCGTGACAAACC 2460469 Query 1456689 CGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG 1456748 | ||| | ||||| ||||||||||| |||||||||| ||||| |||||| || | Sbjct 2460468 CCTTCGACTTCATGGATATGATCTCGCTCCAGGGCAAGACTAACTTCTTCGAGAAGCGTG 2460409 Query 1456749 TGGC-GAGTACGCCAAGGCCGGCGTCACCGC 1456778 || | || ||| | ||||| ||||| | ||| Sbjct 2460408 TGTCGGATTACTCGAAGGCTGGCGTGAACGC 2460378 Score = 113 bits (124), Expect = 6e-19 Identities = 141/188 (75%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 |||||||||| ||||||| || | |||||||| ||||| || || ||||| ||| | Sbjct 2463394 CGCTCATCGGTCTGAACGCGGCCT-TGATGTGCCAATACATCGAGTTC-GTCGCAGACAG 2463451 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 ||||||| || ||||| || |||| ||||||| | | ||||||||| | | Sbjct 2463452 ACTGCTCGTAGCTCTCGGAAACG-AGAAACACTACCATTCAACTAACCCGTTCGACTTCA 2463510 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACG 1456759 |||| ||||||| ||| ||||||||||||||||||||||| || || |||||| | Sbjct 2463511 TGGATATGATCTCACTCCAGGGCAAGACCAACTTTTTCGAGAAACGTGTCTCCGAGTATG 2463570 Query 1456760 CCAAGGCC 1456767 | |||||| Sbjct 2463571 CGAAGGCC 2463578 >seq4 Length=2972551 Score = 111 bits (122), Expect = 2e-18 Identities = 107/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 262912 CAGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAG 262971 ||||| ||||| | |||||| | ||||| |||| |||||| || ||| | || |||||| Sbjct 1422799 CAGCACGGCCTTAGGAACTCGCTCCTCGTCGCGCCCATGCCTACCGCCTCCACATCGCAG 1422740 Query 262972 ATCCTGGGCAACACCGAGGCGTTCGAGGTCAT-CACGAGCAACATCTACACGCGCCGCGT 263030 || |||||||||| |||| |||||| ||| ||| ||||||||||| || || ||||| Sbjct 1422739 ATTCTGGGCAACAACGAGTGCTTCGAGC-CATACACCAGCAACATCTATACCCGTCGCGT 1422681 Query 263031 GCTCTCGGGCGACTT 263045 |||| | ||||| || Sbjct 1422680 GCTCGCTGGCGAGTT 1422666 Score = 93.3 bits (102), Expect = 6e-13 Identities = 176/258 (68%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| ||||||| ||||| || ||| |||||| ||||| |||||||||||| || Sbjct 1423749 GGTGGCAACAAGCGCCCTGGCGCGTTCGCCATCTACCTCGAACCCTGGCACGCCGACATC 1423690 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | | ||||| |||||||||||||| ||||| || | || || Sbjct 1423689 TTCGAGTTCATCGACCTGCGCAAGAACCACGGCAA-GGAGGAGG-----TTCGAGCCCGT 1423636 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 || ||||| |||| || |||| ||| ||||| ||| ||| | | | | || || Sbjct 1423635 GACCTCTTCTACGCGCTTTGGATCCCCGATCTGTTCATGAAGCGCGTCGAGTCTGGTGGC 1423576 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 | ||||| ||||| ||||| ||| || || || || |||||| || || | | Sbjct 1423575 AAATGGTCTCTCTTCTGCCCAAACGAAGCACCTGGTCTCCACGAAGTCTGGGGTGATGAG 1423516 Query 262028 TTTGACGCCCTCTATGAG 262045 ||||| || ||||| ||| Sbjct 1423515 TTTGAGGCACTCTACGAG 1423498 Score = 89.7 bits (98), Expect = 7e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 262420 CAACCTCAATCGTGTGATTGACATTAATCACTACCCGGTGCCCGAGGCCCGCCACTCGAA 262479 ||||||||| || | || ||| || |||||||| | ||||||||||||| |||||| Sbjct 1423142 CAACCTCAACCGCATTATCGACGCCAACTACTACCCGATTCCCGAGGCCCGCCGCTCGAA 1423083 Query 262480 TCTGCGCCATCGACCGATGGGCGTCGGCGTGCAGGGCCTCGCCGACG 262526 |||||||||| || || ||| | || |||||||| ||||| |||| Sbjct 1423082 CATGCGCCATCGTCCCATCGGCATTGGTGTGCAGGGTCTCGCAGACG 1423036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177796153513272