Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 138 1e-27 seq2 98.7 1e-15 >seq4 Length=2972551 Score = 138 bits (152), Expect = 1e-27 Identities = 305/452 (67%), Gaps = 9/452 (2%) Strand=Plus/Plus Query 111348 TGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAA 111407 ||||| ||||||||| ||||||||| | || || ||||| | || | | || | Sbjct 1423377 TGTTGGCCGCATCCTTATAGAGCATGAAAGGACCACCAGTCTCGATTTGGGCCTCCAGGA 1423436 Query 111408 TAGCCTTCCAAA-CATCGGCGGCTGG-TACAATGGCGTTGGCCCGTCCCTCCGCCTCGTA 111465 | || | ||||| | || | | || | || | ||| || || ||||| |||||| Sbjct 1423437 TGGCGTACCAAAGCTTCTGAGCCTCGATAGTCTTCCGT--GCGCGACCCTCGCGCTCGTA 1423494 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTC 111525 || |||||| || |||||||| |||||| | ||| |||||| ||||| | || Sbjct 1423495 CTGCTCGTAGAGTGCCTCAAACTCATCACCCCAGACTTCGTGGAGACCAGGTGCTTCGTT 1423554 Query 111526 TGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 111585 ||| ||||| |||||||||| ||||| ||| || ||||||||||| || || || || Sbjct 1423555 TGGGCAGAAGAGAGACCATTTGCCACCAGACTCGACGCGCTTCATGAACAGATCGGGGAT 1423614 Query 111586 CCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 111645 ||| || | | ||||| || | ||| |||| || | || ||||| || | Sbjct 1423615 CCAAAGCGCGTAGAAGAGGTCACGGGCTCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAG 1423674 Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC--- 111702 || | |||||| | ||| || |||||||| || || || |||| |||| | || Sbjct 1423675 GTCGATGAACTCGAAGATGTCGGCGTGCCAGGGTTCGAGGTAGATGGCGAACGCGCCAGG 1423734 Query 111703 -CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 111761 | | | | ||| |||||| ||||| ||||| || |||| | || || ||||| | Sbjct 1423735 GCGCTTGTTG-CCACCTTGATCGACATACCGCGCGGTAGCGTCGTAGACACGGAGCATAG 1423793 Query 111762 GAATAATACCATCTGATTGACCATTTGTCCCC 111793 ||| ||| || | || | ||| || || ||| Sbjct 1423794 GAACAATTCCGTTGGAGTAACCGTTGGTGCCC 1423825 Score = 122 bits (134), Expect = 1e-22 Identities = 175/247 (71%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883 ||||||| |||||||| ||||||||| ||| ||| ||||| ||| | ||||| Sbjct 1423911 TGGATGTTGATCCCAATGCCCCCAGCCGTCTTGCTGATCATGGCACAGTCCTTGAGAGTC 1423970 Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943 ||||||||| | ||| ||||| ||||| | | ||||||||| | ||| || Sbjct 1423971 GAATAGATACCCTCGATGGAGTCATCCTTCATACAAACAAGGAAGCACGAGCTCATTTGA 1424030 Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGAC 112003 || | || || ||||||||||||||||| |||| ||| ||| |||| || | |||| Sbjct 1424031 GGGTTAGGGGTGCCAGCATTGAAGAGGGTGGGTGATGCATGAGTGAAGTAACGCTCGGAC 1424090 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 || || |||||| | | |||| || ||||| | || ||||| |||| || || Sbjct 1424091 ATGAGGTTGTATGTTTGAAGGACACGCTCGATGTCGGCTCCATGGATACCGACGGCAACA 1424150 Query 112064 CGCATGA 112070 ||||||| Sbjct 1424151 CGCATGA 1424157 >seq2 Length=3722621 Score = 98.7 bits (108), Expect = 1e-15 Identities = 178/255 (70%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 122645 TGAAGAGCTC-CACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTT 122703 |||||||| |||| |||| || ||| | |||||| || || || || || || || Sbjct 2460730 TGAAGAGCAAGCACG-CAAAGTCGGTGTGCATACCCTCGTCGCGCGAGATGAGCTCGTTC 2460788 Query 122704 GAGAAGCATAGACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGA 122762 ||||| ||||| ||||| | || |||||||| | ||| | |||| ||| ||| || Sbjct 2460789 GAGAAAGTGAGACCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATAGACGC-GAAGGA 2460847 Query 122763 CCCGGAGAAGAAGATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCG 122822 || ||||||||||||||||| ||| || || || | ||||||||| ||||| | | Sbjct 2460848 ACCAGAGAAGAAGATACCCTCGACAGCAGCGAAGGCGACAAGGCGTTCCGCGAAAGCGGA 2460907 Query 122823 AGACTTTGCATCAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGT 122882 | ||| || | ||| | ||||| | |||||||||| || || || | || Sbjct 2460908 ATTCTTGTCAGAGATCCAGCGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATCGT 2460967 Query 122883 TTGGATGGCTTCAAA 122897 | |||||| ||||| Sbjct 2460968 CTCGATGGCGTCAAA 2460982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030775337600