Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 140 1e-27 >seq1 Length=4606855 Score = 140 bits (154), Expect = 1e-27 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || | |||||| || ||||| || || ||||| | Sbjct 1903767 TTTGCATACCACCGCGGAGACGAAGGACCAAATGAAGCGTTGACTCCTTCTGGATATTGT 1903708 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || ||||| || || || || ||||| ||||||||||| | Sbjct 1903707 AGTCGGAAAGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGT 1903648 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || || ||||| |||||||| || || || |||||||| || | || || | Sbjct 1903647 CAGGCGGGATGCCCTCTTTGTCCTGAATCTTCGCCTTAACATTATCGATGGTGTCGGACG 1903588 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| || | ||||| || || || || || ||||| || ||||| Sbjct 1903587 ACTCGACCTCAAGAGTGATAGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCAT 1903533 Score = 140 bits (154), Expect = 1e-27 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 ||||| ||||| || ||||| ||||| || || ||||| || | || || ||||| || Sbjct 1904247 ACAAGGTGAAGTGTCGACTCCTTTTGGATGTTGTAATCCGAGAGAGTACGACCATCCTCG 1904188 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648 || || || ||||| ||||| ||||||||||| ||||| || || || || || |||||| Sbjct 1904187 AGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGA 1904128 Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708 || || || || || || || || | |||||| | || || || || || | ||||| Sbjct 1904127 ATCTTCGCCTTCACGTTGTCGATGGTATCAGAAGACTCGACCTCCAGCGTGATCGTCTTG 1904068 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || || |||||||||||| Sbjct 1904067 CCAGTAAGCGTCTTCACGAAAATCTGCATT 1904038 Score = 116 bits (128), Expect = 1e-20 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 ||| || || || |||||||| || || || || ||||| ||||| || || |||||||| Sbjct 1903952 CTCCTTCTGGATGTTATAATCGGACAACGTGCGACCATCCTCAAGCTGCTTCCCAGCAAA 1903893 Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665 || || || |||||||||||||| || ||||| || || || || || || || || || Sbjct 1903892 AATGAGGCGCTGCTGATCAGGAGGGATCCCTTCCTTGTCTTGGATCTTTGCCTTAACGTT 1903833 Query 140666 ATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || |||| || || | || || || || || | |||||||| || | || || || Sbjct 1903832 GTCGATCGTGTCCGAAGACTCGACCTCGAGAGTGATAGTCTTTCCTGTCAACGTCTTCAC 1903773 Query 140726 AAAAATCTGCAT 140737 ||||| ||||| Sbjct 1903772 GAAAATTTGCAT 1903761 Score = 96.9 bits (106), Expect = 1e-14 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || ||| || || || || || ||||| | || || || || || | Sbjct 1904474 CAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCGTCCTCCA 1904415 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 || || || || ||||| || || ||||| ||||| ||||| || || || ||||||| Sbjct 1904414 ACTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCAGGCGGAATACCCTCCTTGTCCTGAA 1904355 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || || || |||| || || | || || || || || | ||||| | Sbjct 1904354 TCTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGC 1904295 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || ||||||||||| Sbjct 1904294 CCGTGAGGGTCTTGACGAAAATCTGCAT 1904267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515251371385268