Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 8e-15 seq1 95.1 8e-15 >seq3 Length=3223173 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||||||||||| || ||||| || || || || || ||| | || || || || Sbjct 2801707 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGCCCATCCTCGAGCTGC 2801766 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | |||||| ||||| ||||| | ||||||||||| |||| || Sbjct 2801767 TTGCCGGCGAAGATGAGACGCTGCTGGTCTGGCGGAATACCCTCCTTGTCCTGGATC-TT 2801825 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| | || ||||| ||| || |||| ||| || || || || || Sbjct 2801826 CGCCTTCACGTTGTCGATCGTGTCCGACGACTCAACCTCCAAGGTGATGGTCTTCCCCGT 2801885 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | ||| || || || |||||||| Sbjct 2801886 GAGCGTCTTGACGAAGATCTGCAT 2801909 >seq1 Length=4606855 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||||||||||| || ||||||||||| || | || || | || ||||| || Sbjct 1903963 TGGAGCGTGCTCTCCTTCTGGATGTTATAATCGGACAACGTGCGACCATCCTCAAGCTGC 1903904 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || ||||| || | ||||| || || || || | || ||||||||| |||| || Sbjct 1903903 TTCCCAGCAAAAATGAGGCGCTGCTGATCAGGAGGGATCCCTTCCTTGTCTTGGATC-TT 1903845 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || |||||| | || ||||| ||| || || | || || || || || || Sbjct 1903844 TGCCTTAACGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGAGTGATAGTCTTTCCTGT 1903785 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||||| ||||| ||||| Sbjct 1903784 CAACGTCTTCACGAAAATTTGCAT 1903761 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||||||||||| || ||||| || || || || || || |||| || | || Sbjct 1904469 TGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCGTCCTCCAACTGC 1904410 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || || || || | ||||| ||||| ||||| | ||||||||||| ||| || Sbjct 1904409 TTCCCCGCGAAGATGAGGCGCTGCTGGTCAGGCGGAATACCCTCCTTGTC-CTGAATCTT 1904351 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| | || ||||| | ||| || |||| || ||||| || || || Sbjct 1904350 CGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCCGT 1904291 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || || ||||||||||| Sbjct 1904290 GAGGGTCTTGACGAAAATCTGCAT 1904267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729001620348