Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 187 6e-42 seq3 170 4e-37 seq6 105 2e-17 >seq1 Length=4606855 Score = 187 bits (206), Expect = 6e-42 Identities = 168/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 |||||||||||| || ||||| ||||||||||| ||||||| || || | ||||| || Sbjct 1904248 GACAAGGTGAAGTGTCGACTCCTTTTGGATGTTGTAATCCGAGAGAGTACGACCATCCTC 1904189 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 ||||||||||| |||||||| || ||||| |||||||| || | || ||||||||||| Sbjct 1904188 GAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTG 1904129 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||||| |||||||| |||||||| ||||| || ||||| || ||||||||||| Sbjct 1904128 AATCTTCGCCTTCACGTTGTCGATGGTATCAGAAGACTCGACCTCCAGCGTGATCGTCTT 1904069 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || ||||| || || | ||||||| Sbjct 1904068 GCCAGTAAGCGTCTTCACGAAAATCTGCATT 1904038 Score = 163 bits (180), Expect = 7e-35 Identities = 161/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 210907 CAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCA 210966 ||||||| || ||| ||| || |||||||| || || | || || | || || |||| Sbjct 1904474 CAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCGTCCTCCA 1904415 Query 210967 GCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGA 211026 |||||| || |||||||| ||||| || |||||||| |||| || ||||||||||| | Sbjct 1904414 ACTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCAGGCGGAATACCCTCCTTGTCCTGAA 1904355 Query 211027 TCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTC 211086 |||| |||||||| ||||| ||||| ||| || ||||| || ||||||||||| | Sbjct 1904354 TCTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGC 1904295 Query 211087 CCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||| ||||| || || | |||||| Sbjct 1904294 CCGTGAGGGTCTTGACGAAAATCTGCAT 1904267 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||| || ||||| || ||||| || || || | |||||| | || || Sbjct 1903744 AGGACCAAATGAAGCGTTGACTCCTTCTGGATATTGTAGTCGGAAAGGGTACGACCGTCC 1903685 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || ||||| |||||||| || | || || |||||| Sbjct 1903684 TCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCAGGCGGGATGCCCTCTTTGTCC 1903625 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||||||||| || || ||||| |||||||| ||| Sbjct 1903624 TGAATCTTCGCCTTAACATTATCGATGGTGTCGGACGACTCGACCTCAAGAGTGATAGTC 1903565 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| ||||| | ||||| Sbjct 1903564 TTGCCCGTGAGGGTCTTGACAAAGATTTGCAT 1903533 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 ||||| || ||| ||| || |||||||||||||| | | || | ||||| || ||| Sbjct 1903966 AGGTGGAGCGTGCTCTCCTTCTGGATGTTATAATCGGACAACGTGCGACCATCCTCAAGC 1903907 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||||| || || || || ||||| || || |||||||| | ||||||||||| |||||| Sbjct 1903906 TGCTTCCCAGCAAAAATGAGGCGCTGCTGATCAGGAGGGATCCCTTCCTTGTCTTGGATC 1903847 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 ||| || ||||| ||||| ||||| || || |||||||||||||| |||||||| Sbjct 1903846 TTTGCCTTAACGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGAGTGATAGTCTTTCCT 1903787 Query 211089 GTGAGAGTCTTTACAAACACCTGCAT 211114 || | ||||| || || | ||||| Sbjct 1903786 GTCAACGTCTTCACGAAAATTTGCAT 1903761 Score = 111 bits (122), Expect = 4e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||||||||| |||||||| || |||||||| || |||| || || | || || Sbjct 1903516 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGATAGAGTGCGACCGTCC 1903457 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 || |||||||||||||||||||||||||| || || || ||||||| Sbjct 1903456 TCGAGCTGCTTGCCTGCGAAGATAAGGCGCTGCTGATCGGGAGGAA 1903411 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||| |||||||| || || || ||||| || |||||| ||| |||||| Sbjct 1903346 CCCTCCTTGTCTTGGATCTTGGCCTTAACATTGTCGATAGTATCAGAGGATTCGACCTCG 1903287 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| |||||||| ||||| ||||| || || | |||||| Sbjct 1903286 AGAGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 1903243 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || || || ||||||||||| || || |||||| Sbjct 3842029 CCCTCCTTGTCCTGGATCTTGGCCTTAACATTGTCGATGGTGTCGGAAGACTCCACCTCG 3841970 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||||||||| ||||| || ||||| || || | ||||| || Sbjct 3841969 AGGGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAGATTTGCATCTT 3841923 >seq3 Length=3223173 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || ||| ||| || |||||||| || |||| || || | ||||| Sbjct 2801698 AGGACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGCCCATCC 2801757 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || ||||| || |||| || ||||||||| Sbjct 2801758 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGCGGAATACCCTCCTTGTCC 2801817 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||| ||||| || |||||||| | ||||| ||| Sbjct 2801818 TGGATCTTCGCCTTCACGTTGTCGATCGTGTCCGACGACTCAACCTCCAAGGTGATGGTC 2801877 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 2801878 TTCCCCGTGAGCGTCTTGACGAAGATCTGCAT 2801909 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 |||||||| ||| ||| || || ||||| || || | ||||| | || || |||| | Sbjct 2801987 AGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGGGTGCGACCGTCCTCCAAC 2802046 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 |||||||| || ||||| | ||| || ||||||||||| | || ||||| ||||||||| Sbjct 2802047 TGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATC 2802106 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || || || || ||||||||||| || || |||||||||||||||||||| ||| Sbjct 2802107 TTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGAGTGATCGTCTTGCCC 2802166 Query 211089 GTGAGAGTCTTTACAAACACCTGCAT 211114 || || |||||||| || | ||||| Sbjct 2802167 GTCAGCGTCTTTACGAAGATTTGCAT 2802192 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 ||||| || |||||||| || || ||||| || || | ||| || | || || |||||| Sbjct 2802268 AGGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCGTCCTCCAGC 2802327 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||||| || ||||||||||| || || ||||| || || | || ||||| || |||||| Sbjct 2802328 TGCTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTATCTTGGATC 2802387 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || |||||||| ||||||||||| ||| || || ||||| ||||| ||||| || Sbjct 2802388 TTCGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACTTCGAGGGTGATGGTCTTGCCG 2802447 Query 211089 GTGAGAGTCTTTACAAACACCTGCAT 211114 || | ||||| || || | |||||| Sbjct 2802448 GTCAAGGTCTTCACGAAGATCTGCAT 2802473 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || ||||| || ||||| || ||| || |||||| Sbjct 2802700 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTATCCGAGGACTCGACCTCG 2802759 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || ||||| ||||| ||||| | |||||| Sbjct 2802760 AGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 2802803 >seq6 Length=2725691 Score = 105 bits (116), Expect = 2e-17 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||| |||||||| || || || ||||||||||| ||| ||||||||| Sbjct 356796 CCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCG 356855 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116 |||||||| ||||| |||||||| |||||||| || | |||||||| Sbjct 356856 AGAGTGATGGTCTTGCCCGTGAGGGTCTTTACGAAAATCTGCATTT 356901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159149683144940