Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 8e-15 seq6 86.0 4e-12 >seq1 Length=4606855 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||||||||| || |||||||| || || || || ||| || Sbjct 1904267 ATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTGGAGGTCGAGTCCTCG 1904326 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| || ||| | ||||| || || Sbjct 1904327 GACACGATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCGCCTGACCAG 1904386 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || || || |||| |||| ||||| | || |||||| Sbjct 1904387 CAGCGCCTCATCTTCGCGGGGAAGCAGTTGGAGGACGGCCGCACGCTCTCTGACTACAAC 1904446 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 1904447 ATCCAGAAGGAG 1904458 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||||||||||| || || |||||||| || || || || | Sbjct 1903533 ATGCAAATCTTTGTCAAGACCCTCACGGGCAAGACTATCACTCTTGAGGTCGAGTCGTCC 1903592 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | || ||| |||||||| || | ||||| || || Sbjct 1903593 GACACCATCGATAATGTTAAGGC-GAAGATTCAGGACAAAGAGGGCATCCCGCCTGACCA 1903651 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || |||||||| || || || |||| || || | ||| ||||| Sbjct 1903652 GCAACGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACCCTTTCCGACTACAA 1903711 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||| || | ||||| || Sbjct 1903712 TATCCAGAAGGAGTCAACGCTTCATTTGGT 1903741 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || | || ||||| || ||||||||||| || || || || Sbjct 1903761 ATGCAAATTTTCGTGAAGACGTTGACAGGAAAGACTATCACTCTCGAGGTCGAGTCTTCG 1903820 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | ||| || ||||| ||||| | || || ||||| Sbjct 1903821 GACACGATCGACAACGTTAAGGC-AAAGATCCAAGACAAGGAAGGGATCCCTCCTGATCA 1903879 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| || || || || || || | ||||| || |||||| || Sbjct 1903880 GCAGCGCCTCATTTTTGCTGGGAAGCAGCTTGAGGATGGTCGCACGTTGTCCGATTATAA 1903939 Query 23790 CATACAAAAAGAG 23802 ||| || || ||| Sbjct 1903940 CATCCAGAAGGAG 1903952 >seq6 Length=2725691 Score = 86.0 bits (94), Expect = 4e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 |||||||||||||||| || ||||||||||| || || ||||||||||| ||||| ||| Sbjct 356901 AAATGCAGATTTTCGTAAAGACCCTCACGGGCAAGACCATCACTCTCGAGGTTGAGTCCT 356842 Query 23669 CGGACAC 23675 ||||||| Sbjct 356841 CGGACAC 356835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008957359248