Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 122 1e-22 >seq2 Length=3722621 Score = 122 bits (134), Expect = 1e-22 Identities = 260/386 (67%), Gaps = 3/386 (1%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || || | |||||||| || ||||| || |||||||| || |||| || Sbjct 2463187 TCGTTCGAGAACGTCAAGCCGGGCATCAGCCCACGCTTCTTGAGCCAGAAGATTGAGGCA 2463128 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA- 48301 ||| | || || ||||||||||| ||||| || || || ||| || | ||| || | Sbjct 2463127 AAACACCCGGAGAAGAATATGCCCTCTACAGCGGCGAAGGCGACCAGCCGCTCAGCGAAC 2463068 Query 48302 ACTGGCT--TCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 || | || || | |||||| ||| ||||||||| ||||||||||| | || || Sbjct 2463067 ACGGACTGGTCATCAGCTATCCAGCGTAATGCCCAATCGGCCTTCTTCTTGATGCAGGGT 2463008 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419 || || || || || | ||||| || | | || | || | | |||||| || Sbjct 2463007 ATAGTCTCGATGGCGTCGAAGAGGAACGTCCTCTCGTCTGGGTCCCTGATGTAAGTGTCA 2462948 Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 || | ||| || | |||||||| | ||||| || ||||| || || || || Sbjct 2462947 ATGAGAAGGGAGTAGGTCTCGGAGTGGACGTTTTCGATCATGATCTGGAAGCCATAGAAG 2462888 Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539 |||| ||| || | | ||| ||||| || |||| || || | | ||||| || || Sbjct 2462887 CATCGCGCCTCGGCGGCCTGAACCTCGTTAGAAAACCGCTCGACGAGGTTCTCGTTGACG 2462828 Query 48540 ATTCCATCACTAGCAGCAAAAAATGC 48565 || || || || |||||||| || Sbjct 2462827 ATACCGTCCGAGGCCGCAAAAAAGGC 2462802 Score = 118 bits (130), Expect = 1e-21 Identities = 338/516 (66%), Gaps = 8/516 (2%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || |||||||||||||| | || || || |||||||| || || | |||| Sbjct 2460783 TCGTTCGAGAAAGTGAGACCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATAGACGCG 2460842 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || || ||||| ||||| || || || || || || || ||| ||| | || || || Sbjct 2460843 AAGGAACCAGAGAAGAAGATACCCTCGACAGCAGCGAAGGCGACAAGGCGTTCCGCGAAA 2460902 Query 48303 CTGGCTTCGTTGT---GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 || | |||| ||||| || | ||||| || ||||||||||| | ||||| Sbjct 2460903 GCGGAATTCTTGTCAGAGATCCAGCGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAAGGG 2460962 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419 || || || || || | |||||| | | | || || || | ||| ||||| Sbjct 2460963 ATCGTCTCGATGGCGTCAAAGAGGTACTCACGCTGCCTGGGGTCCTTGATGTAGGTATCG 2461022 Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 || | || || | ||||| || || || || || || || || ||||| ||| Sbjct 2461023 ATGAGGAGGGAGTAGGTCTCGGAATGGATGTTCTCCATCATGATTTGGAAGCCGTAGAAA 2461082 Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539 || | || || | | ||| ||||| | | || || || | | ||||| || || Sbjct 2461083 CAGCGGGCCTCGGCGGCCTGGACCTCGTTGGAGAAACGCTCGACAAGGTTCTCGTTGACG 2461142 Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAAT---ATTTTTCGTTG 48596 || || || || || || || || | ||||| | |||| | |||||| Sbjct 2461143 ATGCCGTCCGAGGCGGCGAAGAAGGCAAGGACATGGGAGACGAAATGGCGCTCATCGTTG 2461202 Query 48597 -GAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 48655 || | | || |||||||||| || ||| || || | ||| | || ||||| ||||| Sbjct 2461203 TTGAGCCTG-TTGTTCCAGTCATGGAGATCCTTGGAAAGATCCATCTCCTCAGCAGTCCA 2461261 Query 48656 AAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 || || |||||||| || || ||||| | ||| || Sbjct 2461262 GAAAGAAGCCTCTGCCTTCTTGTACATTTGCCAGAT 2461297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694667445395840