Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3 187 5e-42 seq1 183 6e-41 seq6 105 1e-17 seq2 91.5 3e-13 >seq3 Length=3223173 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | ||||| || || |||||||||||||| | Sbjct 2801682 ACCACCACGGAGACGGAGGACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGA 2801741 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||| |||||||| || || || ||||| ||||| | ||| || ||||| ||| Sbjct 2801742 GAGCGTGCGCCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGCGG 2801801 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| |||||||| || || ||| | ||||| |||||||| | || || Sbjct 2801802 AATACCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCCGACGACTCAAC 2801861 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 2801862 CTCCAAGGTGATGGTCTTCCCCGTGAGCGTCTTGACGAAGATCTGCAT 2801909 Score = 174 bits (192), Expect = 3e-38 Identities = 170/218 (78%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 282883 GGCGAAGTACC-AGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || || ||||| || || | |||| || || || ||||||||||| | ||| || ||| Sbjct 2802256 GGGGACGTACCGAGGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGG 2802315 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 || ||||| || || |||||||| ||||| | ||| || ||||| ||| || |||||| Sbjct 2802316 CCGTCCTCCAGCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGCGGGATGCCCTCC 2802375 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 || ||||||||||| || || ||| | ||||| ||||| || | ||||||||||| ||| Sbjct 2802376 TTATCTTGGATCTTCGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACTTCGAGGGTG 2802435 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || ||||| ||||| ||||| |||||||| Sbjct 2802436 ATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 2802473 Score = 163 bits (180), Expect = 6e-35 Identities = 164/212 (77%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 282889 GTACC-AGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947 ||||| || || | ||||| || || || ||||||||||||| || ||||| || ||| Sbjct 2801981 GTACCGAGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGGGTGCGACCGTCC 2802040 Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007 || | || || || ||||||||||| || || |||||| || || |||||||| || Sbjct 2802041 TCCAACTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCC 2802100 Query 283008 TGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTC 283067 |||||||| || || || | ||||| ||||| |||| || || ||||||||||||||| Sbjct 2802101 TGGATCTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGAGTGATCGTC 2802160 Query 283068 TTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||||| ||||| ||||| || ||||| Sbjct 2802161 TTGCCCGTCAGCGTCTTTACGAAGATTTGCAT 2802192 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || ||| | || || || ||||| | ||||| ||| Sbjct 2802700 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTATCCGAGGACTCGACCTCG 2802759 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| || || | ||||| || || |||||||| Sbjct 2802760 AGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 2802803 >seq1 Length=4606855 Score = 183 bits (202), Expect = 6e-41 Identities = 164/206 (80%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 282894 AGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGT 282953 || || | |||||| || || |||||||||||||||| ||||||||||| ||||| | Sbjct 1904472 AGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCGTCCTCCAAC 1904413 Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || ||||| || ||||| | || || |||||| |||||||||||||||||| || ||| Sbjct 1904412 TGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCAGGCGGAATACCCTCCTTGTCCTGAATC 1904353 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 || || || ||| | ||||| |||||||| | ||||| || || ||||||||||| ||| Sbjct 1904352 TTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGTGATCGTCTTGCCC 1904293 Query 283074 GTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| |||||||| Sbjct 1904292 GTGAGGGTCTTGACGAAAATCTGCAT 1904267 Score = 168 bits (186), Expect = 1e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 282894 AGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGT 282953 || || | |||||| || || |||||||| || || | | |||||| |||||||| || Sbjct 1903966 AGGTGGAGCGTGCTCTCCTTCTGGATGTTATAATCGGACAACGTGCGACCATCCTCAAGC 1903907 Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || ||||| ||||| || | || || || ||| || || || ||||||||||||||| Sbjct 1903906 TGCTTCCCAGCAAAAATGAGGCGCTGCTGATCAGGAGGGATCCCTTCCTTGTCTTGGATC 1903847 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 ||||| || ||| | ||||| |||||||||| ||||| ||||||||||| ||||| || Sbjct 1903846 TTTGCCTTAACGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGAGTGATAGTCTTTCCT 1903787 Query 283074 GTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || ||||| Sbjct 1903786 GTCAACGTCTTCACGAAAATTTGCAT 1903761 Score = 152 bits (168), Expect = 1e-31 Identities = 149/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || |||||||||||||| || | || || || |||||||| || || || || || ||| Sbjct 1904229 TCCTTTTGGATGTTGTAATCCGAGAGAGTACGACCATCCTCGAGCTGCTTGCCAGCGAAG 1904170 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| |||||| |||||| || || ||||||||||| || ||||| || || ||| | Sbjct 1904169 ATCAGACGTTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTG 1904110 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| || || |||| ||||| || || ||||||||||| || || | ||||| ||| Sbjct 1904109 TCGATGGTATCAGAAGACTCGACCTCCAGCGTGATCGTCTTGCCAGTAAGCGTCTTCACG 1904050 Query 283089 AATATCTGCATT 283100 || ||||||||| Sbjct 1904049 AAAATCTGCATT 1904038 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 |||||||||||||||||||| || || || | |||||||| || || | |||||| ||| Sbjct 1903346 CCCTCCTTGTCTTGGATCTTGGCCTTAACATTGTCGATAGTATCAGAGGATTCGACCTCG 1903287 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| ||||| || || | ||||| ||||| |||||||| Sbjct 1903286 AGAGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 1903243 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || || | ||||| ||||| |||| || || ||| Sbjct 3842029 CCCTCCTTGTCCTGGATCTTGGCCTTAACATTGTCGATGGTGTCGGAAGACTCCACCTCG 3841970 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCA 283104 || ||||||||||| ||||| | ||||| ||||| || ||||| |||| Sbjct 3841969 AGGGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAGATTTGCATCTTCA 3841921 >seq6 Length=2725691 Score = 105 bits (116), Expect = 1e-17 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 |||||||||||||||||||| || || || | ||||| |||||||| | || || ||| Sbjct 356796 CCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCG 356855 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101 |||||||| ||||| ||||| | ||||| ||||| |||||||||| Sbjct 356856 AGAGTGATGGTCTTGCCCGTGAGGGTCTTTACGAAAATCTGCATTT 356901 Score = 102 bits (112), Expect = 2e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| |||||||| ||||| || | ||| || || |||||||||||||| Sbjct 356615 ACCACCACGGAGGCGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 356674 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 |||||||||||||||||| || || || || |||||||||| || || ||||| Sbjct 356675 AAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTC 356728 >seq2 Length=3722621 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/182 (71%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || || |||||||| | | |||||| | ||||| ||||| ||||| || || || | Sbjct 2460571 CTCATTGGCATGAACTCAAAGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCTG 2460512 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 | || ||||| || | |||||| || | | |||||||||| || ||||| Sbjct 2460511 CTTGTCGCGCTCGGTTGCGAGAAGTCCTACGGCGTGACAAACCCCTTCGACTTCATGGAT 2460452 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAG 230401 | || || |||||||| || |||||||||||||| |||||||| ||||| || ||| Sbjct 2460451 ATGATCTCGCTCCAGGGCAAGACTAACTTCTTCGAGAAGCGTGTGTCGGATTACTCGAAG 2460392 Query 230402 GC 230403 || Sbjct 2460391 GC 2460390 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/184 (71%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || ||||| |||| || | | ||| | ||||| ||||| ||||| || || | | Sbjct 2463396 CTCATCGGTCTGAACGCGGCCTTGATGTGCCAATACATCGAGTTCGTCGCAGACAGACTG 2463455 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 |||| || || || |||||||| || | || | ||||| |||| || ||||| Sbjct 2463456 CTCGTAGCTCTCGGAAACGAGAAACACTACCATTCAACTAACCCGTTCGACTTCATGGAT 2463515 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTAT-CAAAG 230401 | || ||||||||||| || || ||||| ||||| || |||||| ||| ||| | ||| Sbjct 2463516 ATGATCTCACTCCAGGGCAAGACCAACTTTTTCGAGAAACGTGTCTCCGAGTATGCGAAG 2463575 Query 230402 GCCC 230405 |||| Sbjct 2463576 GCCC 2463579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046737107830024