Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 167 6e-36 seq3 132 1e-25 >seq1 Length=4606855 Score = 167 bits (184), Expect = 6e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || |||||||| || ||||| || || || Sbjct 1904042 CAGATTTTCGTGAAGACGCTTACTGGCAAGACGATCACGCTGGAGGTCGAGTCTTCTGAT 1904101 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || |||||||||||||| || || ||||| || ||||||||| Sbjct 1904102 ACCATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAA 1904161 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| ||||| | ||||| | ||||| ||| || Sbjct 1904162 CGTCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACTCTCTCGGATTACAACATC 1904221 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| || || ||||| || ||||| ||| Sbjct 1904222 CAAAAGGAGTCGACACTTCACCTTGTCTTG 1904251 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| || || || ||||| || ||||| || || ||| Sbjct 1903536 CAAATCTTTGTCAAGACCCTCACGGGCAAGACTATCACTCTTGAGGTCGAGTCGTCCGAC 1903595 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||||||||||||||| || ||||| || ||||||||| Sbjct 1903596 ACCATCGATAATGTTAAGGCGAAGATTCAGGACAAAGAGGGCATCCCGCCTGACCAGCAA 1903655 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || ||| |||| || || || Sbjct 1903656 CGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACCCTTTCCGACTACAATATC 1903715 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || ||||| || ||| Sbjct 1903716 CAGAAGGAGTCAACGCTTCAT 1903736 Score = 136 bits (150), Expect = 1e-26 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || | |||||||| || ||||| |||||||| || || ||| Sbjct 1903764 CAAATTTTCGTGAAGACGTTGACAGGAAAGACTATCACTCTCGAGGTCGAGTCTTCGGAC 1903823 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||| || ||||| ||||| |||||||| || ||||| Sbjct 1903824 ACGATCGACAACGTTAAGGCAAAGATCCAAGACAAGGAAGGGATCCCTCCTGATCAGCAG 1903883 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || ||||| || ||||| | || | ||||||||||| || Sbjct 1903884 CGCCTCATTTTTGCTGGGAAGCAGCTTGAGGATGGTCGCACGTTGTCCGATTATAACATC 1903943 Query 178104 CAAAAAGA 178111 || || || Sbjct 1903944 CAGAAGGA 1903951 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || |||||||| || ||||| || ||| ||| Sbjct 1904270 CAGATTTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTGGAGGTCGAGTCCTCGGAC 1904329 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||||||||| || || || || || |||||||| Sbjct 1904330 ACGATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCGCCTGACCAGCAG 1904389 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||| | || || || | || || | || || ||| || Sbjct 1904390 CGCCTCATCTTCGCGGGGAAGCAGTTGGAGGACGGCCGCACGCTCTCTGACTACAACATC 1904449 Query 178104 CAAAAAGA 178111 || || || Sbjct 1904450 CAGAAGGA 1904457 >seq3 Length=3223173 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || ||||||||||| || || ||| ||| Sbjct 2802470 CAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCCTCCGAC 2802411 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| || || || || || ||||| || |||||||| Sbjct 2802410 ACCATCGACAACGTGAAGGCGAAGATCCAAGATAAGGAGGGCATCCCGCCCGACCAGCAG 2802351 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || ||||| || || || | |||||| |||| || ||| | Sbjct 2802350 CGTCTTATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGTACTCTTTCCGACTACAACATT 2802291 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || || || || || || || Sbjct 2802290 CAGAAGGAGTCCACGCTCCACCT 2802268 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||| | ||||| || || ||| Sbjct 2801906 CAGATCTTCGTCAAGACGCTCACGGGGAAGACCATCACCTTGGAGGTTGAGTCGTCGGAC 2801847 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| |||||||| || || || || || |||||||| Sbjct 2801846 ACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGTATTCCGCCAGACCAGCAG 2801787 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| ||||| | || || | || || ||| || Sbjct 2801786 CGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGCACGCTCTCGGACTACAACATC 2801727 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| Sbjct 2801726 CAGAAGGAGAGCACCCTCCACCTTGT 2801701 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || |||||||| ||||||||||| || ||| Sbjct 2802189 CAAATCTTCGTAAAGACGCTGACGGGCAAGACGATCACTCTCGAGGTGGAGTCTTCCGAC 2802130 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| ||||| || || || |||||||| |||||||| Sbjct 2802129 ACCATCGACAATGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAGCAG 2802070 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || ||| | || || || | || || | || || ||| | Sbjct 2802069 CGCTTGATCTTTGCGGGCAAGCAGTTGGAGGACGGTCGCACCCTGTCTGACTACAACATT 2802010 Query 178104 CAAAAAGA 178111 || || || Sbjct 2802009 CAGAAGGA 2802002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728794042264