Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ganoderma_20sp._2010597_20SS1_20[JGI_20Gansp1_202011-03-16] 156 sequences; 39,522,573 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3 165 8e-36 seq1 156 4e-33 seq6 95.1 1e-14 >seq3 Length=3223173 Score = 165 bits (182), Expect = 8e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || |||||||||||||| ||||| ||||| ||| Sbjct 2801683 CCACCACGGAGACGGAGGACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 2801742 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || |||||| | || |||||||||||||||||||| || || ||||| ||||| | ||| Sbjct 2801743 AGCGTGCGCCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGCGGA 2801802 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || |||| ||| | | | ||||| |||||| || Sbjct 2801803 ATACCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTGTCGATCGTGTCCGACGACTCAAC 2801861 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || ||||| |||||||| ||||| |||||||| Sbjct 2801862 CTCCAAGGTGATGGTCTTCCCCGTGAGCGTCTTGACGAAGATCTGCAT 2801909 Score = 149 bits (164), Expect = 6e-31 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 || || || |||||||||||||||||||| ||||| || |||||||| |||| || | | Sbjct 2801987 AGGTGAAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGACAGGGTGCGACCGTCCTCCAAC 2802046 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 |||||||| || || |||| |||||| ||||| | || | || |||||| ||| ||| Sbjct 2802047 TGCTTGCCCGCAAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATC 2802106 Query 41777 TTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTAC 41834 || ||| || | || | |||||| ||||||||||| | || ||||| || | Sbjct 2802107 TTCGCCTTGACATTGTCG--ATGGTGTCGGAAGACTCCACCTCGAGAGTGATCGTCTTGC 2802164 Query 41835 CCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||||||||||||||| || ||||| Sbjct 2802165 CCGTCAGCGTCTTTACGAAGATTTGCAT 2802192 Score = 120 bits (132), Expect = 3e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 || || |||||| ||||||||||||||| |||||||| || || || |||| || ||| Sbjct 2802268 AGGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTACGGCCGTCCTCCAGC 2802327 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 ||||| |||||||| || || ||||| ||||| | || | || |||||| || ||| Sbjct 2802328 TGCTTCCCGGCGAAGATAAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTATCTTGGATC 2802387 Query 41777 TTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 || |||| ||| | | | |||||| ||||| || || | || || || || || Sbjct 2802388 TTCGCCTTC-ACGTTGTCGATGGTGTCGGAGGACTCGACTTCGAGGGTGATGGTCTTGCC 2802446 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| ||||| ||||| ||||||||| Sbjct 2802447 GGTCAAGGTCTTCACGAAGATCTGCATG 2802474 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| || ||||| || |||||| |||| ||||||||||||||||| || Sbjct 2802561 CTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGCCCGTCCTCGAGCTGCTTGCCGGCAAA 2802620 Query 41731 TATCAGGCGCTGTTGGTC 41748 || || ||||| ||||| Sbjct 2802621 GATGAGACGCTGCTGGTC 2802638 >seq1 Length=4606855 Score = 156 bits (172), Expect = 4e-33 Identities = 169/219 (77%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 |||| |||| | || || ||||||||||||||||| ||||| ||||| ||||| ||||| Sbjct 1904482 AGAC-TAAC-CAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGG 1904425 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || | |||||| || ||||| || |||||||| ||||| | |||| | |||| Sbjct 1904424 CCGTCCTCCAACTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCAGGCGGAATACCCTCC 1904365 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| | || || | ||| | | | ||||| ||||| ||||||| ||| Sbjct 1904364 TTGTCC-TGAATCTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGCGT 1904306 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || ||||| || ||||| |||||||||||||| Sbjct 1904305 GATCGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 1904267 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||| ||| ||||| ||||||||| || || |||||||| Sbjct 1903759 CCACCGCGGAGACGAAGGACCAAATGAAGCGTTGACTCCTTCTGGATATTGTAGTCGGAA 1903700 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||||||||||||||| ||||| || || ||||| | || Sbjct 1903699 AGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCAGGCGGG 1903640 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||| |||||| ||| | || || | ||| | | |||||| |||||| || Sbjct 1903639 ATGCCCTCTTTGTCC-TGAATCTTCGCCTTAACATTATCGATGGTGTCGGACGACTCGAC 1903581 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || ||||| || ||||| || || || ||||| Sbjct 1903580 CTCAAGAGTGATAGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCAT 1903533 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || || || || || || |||||| || ||||| || || ||| Sbjct 1904265 CCTCCCCGCAGACGCAAGACAAGGTGAAGTGTCGACTCCTTTTGGATGTTGTAATCCGAG 1904206 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || |||||||||||||| ||||| ||||| || || ||||| | || Sbjct 1904205 AGAGTACGACCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCAGGTGGG 1904146 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || || | ||| | | | || || ||||| || Sbjct 1904145 ATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACGTTGTCGATGGTATCAGAAGACTCGAC 1904087 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| ||| ||||| || || || |||||||| |||||||||||||| Sbjct 1904086 CTCCAGCGTGATCGTCTTGCCAGTAAGCGTCTTCACGAAAATCTGCAT 1904039 Score = 118 bits (130), Expect = 1e-21 Identities = 158/213 (74%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 41653 CACC-AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 |||| || || ||||||||||||||||| |||||||| ||||| | ||||| | || | Sbjct 1903971 CACCGAGGTGGAGCGTGCTCTCCTTCTGGATGTTATAATCGGACAACGTGCGACCATCCT 1903912 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCC 41770 | |||||||| || || || || |||||||| || || | |||| | || ||||||| | Sbjct 1903911 CAAGCTGCTTCCCAGCAAAAATGAGGCGCTGCTGATCAGGAGGGATCCCT-TCCTTGT-C 1903854 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 || | ||||| | |||| | | | ||||| ||||| ||||| | || || || Sbjct 1903853 TTGGATCTTTGCCTTAACGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGAGTGATAGT 1903794 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || |||| |||||| |||||||| ||||| Sbjct 1903793 CTTTCCTGTCAACGTCTTCACGAAAATTTGCAT 1903761 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || || || || ||| ||||||||| ||||| ||||| || Sbjct 1903531 CCGCCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAT 1903472 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||| ||||| || |||||||| || || | ||| Sbjct 1903471 AGAGTGCGACCGTCCTCGAGCTGCTTGCCTGCGAAGATAAGGCGCTGCTGATCGGGAGGA 1903412 Query 41756 ACGCT 41760 | ||| Sbjct 1903411 ATGCT 1903407 >seq6 Length=2725691 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||| || || ||| ||||||||| ||||| |||||| Sbjct 356616 CCACCACGGAGGCGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTA 356675 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || ||||||||||| ||||| | ||| Sbjct 356676 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 356735 Query 41756 ACGCT 41760 | ||| Sbjct 356736 ATGCT 356740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303098507200