Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq28 325 5e-84 >seq28 Length=226377 Score = 325 bits (360), Expect = 5e-84 Identities = 1191/1845 (65%), Gaps = 45/1845 (2%) Strand=Plus/Minus Query 52807 TGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 52866 ||||||||||| | | || ||| ||| | || | | |||||| |||| || || | Sbjct 218647 TGTGAATTGAACAGCATTGGCTGCAGGTCTAGTTCTCAAATAGTAAGTTCCAGTCTTCAA 218588 Query 52867 ACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTAT 52926 ||| |||| ||||| || ||||| || |||| || | ||| | | || Sbjct 218587 ACCCTTCTTCCAACCGTAGAAGTGCATTGAAGTAAGTTGACCGAAAGTAGGAGCGGATAG 218528 Query 52927 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 52986 |||||| |||| ||||||| |||| ||||| || || || || |||||||| | || Sbjct 218527 ATGGATGTTCAAAGATTGAGATTGACAAATGAAAGCACCTCTATCAGCAGCCATATCGAT 218468 Query 52987 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT-TCTGGAA 53045 ||| | ||| || ||||||||||||| ||| || || | ||| || ||| ||||||| Sbjct 218467 GATAGACTTCTGAGGAATTTCCCAAACAGTCTTGTATAAAGCCTTGAT-TCTATCTGGAA 218409 Query 53046 GGTTTG-TA--TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCAT 53102 || || || ||||| |||||||||| | || ||||| ||||| ||| |||| Sbjct 218408 TTCCTGGTACGTTTTGAATCGATCCACCATGAGCGATGATCCTGTTCTTCATCGATTCAT 218349 Query 53103 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 53162 |||||| | ||| || |||| | | ||||| || ||||| ||||||| Sbjct 218348 CCCATAAACCTTGTTCGACCAATTCTCTCAACAACCAAGGATTGACGACTTGGAATTCTC 218289 Query 53163 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 53222 ||| ||| ||||| |||| ||| || || || || ||||| | | || || | Sbjct 218288 CAGCCAAGACTCTACGAGAGTAGATGTTTGAAGTGTAAGGTTCGAAGCATTCGTTGAAAC 218229 Query 53223 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 53282 |||| ||||||| ||| || ||||| ||||| || || | | | | || | |||| Sbjct 218228 CCAAGATTTGAGAAGTAGAGGCAGTTGGCATTGGAGCTAGAAGAAGAGAGTTACGTAGAC 218169 Query 53283 CGTATGTTCTG--ATTTTATCTTTTA--GAGGTTCCCAATTCCAAAGATCCGACGGTACA 53338 | ||||| || || || | || | || || ||||| ||||||||| || || Sbjct 218168 C--ATGTTTTGCCATCTTTGCCTTCAATGAAGT--CCAATCCCAAAGATCTGAAGGAGTG 218113 Query 53339 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATC 53397 || ||| || || | ||| || | || ||| | || ||| Sbjct 218112 ACACCCCACATGTCGTATTGAAGTTCTCCTTGACTTGCTGGACTTCCCT-CGTAAGTAGA 218054 Query 53398 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCT-CTAATGCACCGTAATAAATGG 53456 ||| |||||||| | ||||||| ||| | | | | | || || ||| ||| |||| Sbjct 218053 GTAAGGTCCTTCGATTTCAGCTAATTCG-ATCGAACGTTCCAAAGCGGCGTGATAGATGG 217995 Query 53457 TTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGA 53516 |||||||||| | || || | | ||||| | || || |||||| | || Sbjct 217994 TTTCGAAGATTTGGACGTTGAGCTTACGAGCTTCTGGAGAGTCGAAAGGATAACCCATGA 217935 Query 53517 GAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 53576 || || || || |||| ||||||||||| || ||||| || | ||| | || | Sbjct 217934 TCATGAAAGCATCAGCTAGACCTTGAACACCGATTCCGATTGGACGATGACGGAAGTTGG 217875 Query 53577 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGA 53636 | |||||| | ||| || || || || || || || || |||||||||| Sbjct 217874 AACGACGAGCTTCCTCGACAGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTCCAC 217815 Query 53637 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATT-GTCCATCTAT-TACAAA 53694 ||| || ||| || ||| | |||| || || | || ||| || | Sbjct 217814 AAATGACCTTGGAGAC---CTTGTG---GAGACGTTCGAAGTCGTAGGTCTTGGTAGCAG 217761 Query 53695 CAT--------GTTCAATG--CAATAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 53744 | | ||| | | | || || |||| || || |||||||| |||| | | Sbjct 217760 CGTCGATGAAGGTTGGAAGAGCGATGGAAGCCAAGTTGCAGACGGCTACTTCATCCGGAG 217701 Query 53745 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 53804 | |||| || || ||||| ||||| || |||||||||||||||| || | | Sbjct 217700 CACTGTATTCGATGATTTCAGTACAAAGGTTTGAGCACTTGATGGTTCCTAGGTTCTTCT 217641 Query 53805 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCT 53864 | ||||||||| |||| || ||||| ||||| ||| | || | |||||||| | | Sbjct 217640 GGTTACTCTTTCTGTTTGCAGCGTCCTTGTAAAGCATGTAAGGATTTCCAGTTTCGGTTT 217581 Query 53865 GGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTT 53924 | | ||| | || || | ||| | |||| || | | ||| ||| || Sbjct 217580 GAGCTTCCAAGATGGCATACCAAAGCTTTTGAGCTTTGACGGTTCTCTTGGCTCTACCTT 217521 Query 53925 CTCTTTCGTA--TAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 | |||||| | ||||| | | ||| || || ||||| | || | | | || Sbjct 217520 CGGATTCGTACTTGGTGTAAAGAGC--TTCGAATTCCTCTCCGTAGACGTCAGCGAGACC 217463 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 || ||||| | ||||| | | ||||| || ||| | || |||| ||||| || Sbjct 217462 TGGGCATTCTCCAGGACAAAGTAGAGACCAATCCTCGTTCTTCTCTACTCTCTTCATGAA 217403 Query 54043 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102 ||| || |||||||||||||| || || ||||||| | | |||||| ||||| Sbjct 217402 GAGGTCTGGAATCCAAAGAGCGTAGAACAGTTCTCTGGCACGAACTTCCTCCTTTCCGTG 217343 Query 54103 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGT 54162 ||||| ||||| | ||| | | | || |||||||| || |||||||| |||| Sbjct 217342 GTTCTTACGTAGATCCAAGAATTCGAAGACGTCTGAATGCCATGGCTCCAAGTAGATGGC 217283 Query 54163 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 54222 | | || || || ||||||||||| ||||| | ||||||||| ||||| || || || Sbjct 217282 AAAGGCACCTGGACGCTTGTTTCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGTAGAC 217223 Query 54223 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 54282 | | ||| |||| ||||| ||||| |||||||| || | || || |||| | Sbjct 217222 ACGTAGCATGGGAACGATACCGTTGGAGAATCCATTGGTTCCAGCAATGTAAGATCCAGT 217163 Query 54283 GGCACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340 ||||||| || | ||| ||||| || || ||||| | || ||||| | || Sbjct 217162 TCCACGAATGTTGTGGACGTTG--AGACCGATTCCACCTGCAGTCTTGGAGATCATGGCA 217105 Query 54341 CATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399 || ||| || | || || ||||| || || || || ||| ||||| | | | || Sbjct 217104 CA-CGTCTTGAGAGTGTCGTAGATTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAA 217046 Query 54400 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 54459 |||| ||||||||| | || |||||| || || || | || ||||||||||| || Sbjct 217045 ACAGGAAGACATTTGAGAATGAGGAGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGGGT 216986 Query 54460 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATG 54519 || || || || | || || || |||||||| || || | || | ||| Sbjct 216985 GAAAGTCTTCTCGGACATGAGGTTATAAGTCTCGATGGCCTTTTCGACGTCGGTTCCATG 216926 Query 54520 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579 ||||| | ||||||||||| | |||||| ||||| | ||| ||| ||| || || Sbjct 216925 GATTCCAATGGCGACACGCATGAGCATGTGTTGAGGACGTTCGGCGACCTTTCCATTGAT 216866 Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 54624 | || | ||| ||| | || | ||| || ||||| || |||| Sbjct 216865 TCGTAGAAGGTAAGATCTCTCAAGAGTCTTGAAACCGAAGAAGTT 216821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721132444240