Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq15 93.3 4e-14 seq4 89.7 4e-13 seq1 89.7 4e-13 >seq15 Length=848729 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 28960 AAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCG 29019 ||| |||||| ||| |||| || ||||| || || || || ||| || ||| ||| Sbjct 551983 AAAGGCAAATTTTCGTCAAGACCTTGACCGGTAAGACGATCACCCTAGAGGTCGAATCCG 552042 Query 29020 CAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATC 29079 || || | | | || | ||| || || || || ||||| | || || | Sbjct 552043 GTGACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGACC 552102 Query 29080 AACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACA 29139 |||||||| | |||||||| || ||||| ||||||| | |||| || |||||||| Sbjct 552103 AACAAAGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGTAGAACTCTGAGCGATTACA 552162 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||| ||||||||||| ||||| ||| |||| Sbjct 552163 ATATCCAGAAGGAATCCACTCTGCACTTGGT 552193 >seq4 Length=1327562 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || ||||| || || || ||||| ||| ||| | Sbjct 1257956 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAGACTATTACTTTGGAAGTCGAATCTAGT 1257897 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | ||||| ||| ||| || || || || | || |||||| Sbjct 1257896 GATACTATTGATAACGTTAAGGCAAAGATTCAAGACAAGGAGGGAATTCCACCTGATCAA 1257837 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | ||||||||||| || |||||| ||||||| | |||| || ||||||||| Sbjct 1257836 CAACGTCTTATCTTTGCTGGAAAACAATTGGAAGACGGTAGAACTTTGAGCGATTACAAC 1257777 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| |||||||| || ||||| |||| | || |||| || || Sbjct 1257776 ATTCAAAAGGAATCCACCCTTCATTTGGTTCTTCGTCTACGTGGTGG 1257730 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| || || ||||| || |||| ||| | | | Sbjct 1258184 ATGCAAATCTTTGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAAGTCGAATCTGGA 1258125 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | || |||||| || || ||||| | || |||||| Sbjct 1258124 GATACCATCGACAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCCGATCAA 1258065 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | || || || || || ||| | ||||| | ||| || | || ||||| Sbjct 1258064 CAAAGATTGATTTTCGCAGGAAAGCAATTAGAAGACGGTAGAACCTTGTCAGACTACAAC 1258005 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || |||||||| ||||||||| |||| ||||| | || ||||| Sbjct 1258004 ATCCAAAAGGAATCGACTCTTCACTTGGTCTTACGTCTTCGTGGAGG 1257958 >seq1 Length=2409711 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 28964 GCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGA 29023 |||||| ||| | || || || ||||| || || || ||| ||| || | | || Sbjct 336551 GCAAATTTTCGTTAAGACCTTAACGGGTAAGACTATCACCCTCGAGGTTGAGTCTGGTGA 336492 Query 29024 GACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACA 29083 || | | | || | ||| ||||| || || ||||| | || ||||||||| Sbjct 336491 CACTATCGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAACA 336432 Query 29084 AAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATAT 29143 |||| | |||||||| || || ||| |||||||| | ||| | | |||||||| || Sbjct 336431 AAGATTAATCTTTGCTGGAAAGCAATTGGAAGATGGAAGAACCCTTTCGGATTACAACAT 336372 Query 29144 TCAGAAGGAATCTACTCTTCACATGGT 29170 ||| ||||||||||||||||| |||| Sbjct 336371 TCAAAAGGAATCTACTCTTCATTTGGT 336345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428335671118265