Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq4 98.7 8e-16 seq15 96.9 3e-15 >seq1 Length=2409711 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 25037 GCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGA 25096 |||||| ||| | || || || ||||| || || || ||| ||| || | | || Sbjct 336551 GCAAATTTTCGTTAAGACCTTAACGGGTAAGACTATCACCCTCGAGGTTGAGTCTGGTGA 336492 Query 25097 GACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACA 25156 || | | | || ||||| ||||| || || ||||| | || ||||||||| Sbjct 336491 CACTATCGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAACA 336432 Query 25157 AAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATAT 25216 |||| | |||||||| || || |||||||||||| | ||| | | |||||||| || Sbjct 336431 AAGATTAATCTTTGCTGGAAAGCAATTGGAAGATGGAAGAACCCTTTCGGATTACAACAT 336372 Query 25217 TCAAAAGGAATCTACTCTTCACATGGT 25243 ||||||||||||||||||||| |||| Sbjct 336371 TCAAAAGGAATCTACTCTTCATTTGGT 336345 >seq4 Length=1327562 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || |||| || ||||| || || ||||| || |||| ||| | | | Sbjct 1258184 ATGCAAATCTTTGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAAGTCGAATCTGGA 1258125 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | |||| |||||| || || ||||| | || |||||| Sbjct 1258124 GATACCATCGACAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCCGATCAA 1258065 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || || || || || ||||| ||||| | ||| || | || ||||| Sbjct 1258064 CAAAGATTGATTTTCGCAGGAAAGCAATTAGAAGACGGTAGAACCTTGTCAGACTACAAC 1258005 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||||| ||||||||| |||| ||||| | || ||||| Sbjct 1258004 ATCCAAAAGGAATCGACTCTTCACTTGGTCTTACGTCTTCGTGGAGG 1257958 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||||||| | ||||||||||| || |||||||||||||| | |||| || |||| Sbjct 1257842 GATCAACAACGTCTTATCTTTGCTGGAAAACAATTGGAAGACGGTAGAACTTTGAGCGAT 1257783 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| |||||||||||||| || ||||| |||| | || |||| || || Sbjct 1257782 TACAACATTCAAAAGGAATCCACCCTTCATTTGGTTCTTCGTCTACGTGGTGG 1257730 >seq15 Length=848729 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25033 AAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCG 25092 ||| |||||| ||| |||| || ||||| || || || || ||| || ||| ||| Sbjct 551983 AAAGGCAAATTTTCGTCAAGACCTTGACCGGTAAGACGATCACCCTAGAGGTCGAATCCG 552042 Query 25093 CAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATC 25152 || || | | | || ||||| || || || || ||||| | || || | Sbjct 552043 GTGACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGACC 552102 Query 25153 AACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACA 25212 |||||||| | |||||||| || ||||| |||||||| | |||| || |||||||| Sbjct 552103 AACAAAGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGTAGAACTCTGAGCGATTACA 552162 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGT 25243 |||| || |||||||| ||||| ||| |||| Sbjct 552163 ATATCCAGAAGGAATCCACTCTGCACTTGGT 552193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410796484585082