Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq15 100 3e-16 seq4 87.8 2e-12 >seq15 Length=848729 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 ||| |||||| ||||| || || | || || || || |||||| | || |||||| || Sbjct 551983 AAAGGCAAATTTTCGTCAAGACCTTGACCGGTAAGACGATCACCCTAGAGGTCGAATCCG 552042 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | | |||||| || || | ||||| || || ||||| | |||| Sbjct 552043 GTGACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGACC 552102 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| || | |||| || || |||||| |||| |||| | || || | ||| |||| Sbjct 552103 AACAAAGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGTAGAACTCTGAGCGATTACA 552162 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 | ||||||||||| |||| ||||| Sbjct 552163 ATATCCAGAAGGAATCCACTCTGCA 552187 >seq4 Length=1327562 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || || || |||||||| |||| || ||| | Sbjct 1259215 ATGCAAATCTTCGTCAAAACTTTAACTGGAAAGACCATCACTCTCGAAGTGGAATCTGGT 1259156 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| ||| |||| || || || || ||||| | ||||| Sbjct 1259155 GACACCATCGACAACG-TAAAGGCAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCA 1259097 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| || || || || ||||| || | | || || |||||||| Sbjct 1259096 ACAACGTCTCATCTTTGCTGGAAAGCAACTGGAAGATGGTAGAACTCTTTCAGACTACAA 1259037 Query 40869 CATCCAG 40875 ||||||| Sbjct 1259036 CATCCAG 1259030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218794264880