Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq12 87.8 1e-12 >seq12 Length=1121745 Score = 87.8 bits (96), Expect = 1e-12 Identities = 228/343 (66%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 97290 ATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTAT 97349 ||||||||||| ||| | ||||||||||| || |||||| | ||| | ||| Sbjct 391500 ATTCCAAGCACTCATAATGATTCTTCTATCAGTAGGGTTTTCCTTTATTTTCCTAACACA 391559 Query 97350 CTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGC 97409 | | |||||||| || |||| |||| ||||| | | | | | ||||| || Sbjct 391560 TTCCGCCAATTGATCCACTCCTTTGCCACTATAATCCGTATCACAATCCTCATATTTAGC 391619 Query 97410 TCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACA 97469 || ||||| ||||||||||| |||||||| || || | || |||||| ||||| || Sbjct 391620 ACCGAAATGTCTCCATTGGAAACCATAAACTGGACCTAAATCCCCTTCTCTTCTATGACC 391679 Query 97470 GAAAC--CAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCA-CACC 97526 |||| | || | || || | | | || |||||| |||||||||| || | | Sbjct 391680 TAAACCTCTAGAT--TCCAAGAATTCCTTCGAACCATTTCCATCCCAAATATGAATTTTC 391737 Query 97527 AGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCAC 97586 || | | | |||| ||||| ||| ||| ||||| | |||||||||| Sbjct 391738 CTAT-CAGTCAAAAGTTTGGAATCAGTTTCACCTTTGACGAACCAAAGTAATTCTTCCAA 391796 Query 97587 AACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAA 97629 ||| ||||| || ||||| || || || || | ||| ||| Sbjct 391797 AACTCCTCTTGTGAAGACTCTTTTGGTAGTCAATAAAGGTAAA 391839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346783733734910