Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq4 143 4e-29 seq1 125 1e-23 seq12 107 3e-18 >seq4 Length=1327562 Score = 143 bits (158), Expect = 4e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || || || ||||| ||| | || | ||| | | | Sbjct 1257956 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAGACTATTACTTTGGAAGTCGAATCTAGT 1257897 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| || || |||||||| || || || || ||||||||||| Sbjct 1257896 GATACTATTGATAACGTTAAGGCA-AAGATTCAAGACAAGGAGGGAATTCCACCTGATCA 1257838 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | ||||| ||||| ||||||||||| || || || |||| || ||||| || Sbjct 1257837 ACAACGTCTTATCTTTGCTGGAAAACAATTGGAAGACGGTAGAACTTTGAGCGATTACAA 1257778 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||||| ||||| || | ||||||||| | ||| |||| ||||| Sbjct 1257777 CATTCAAAAGGAATCCACCCTTCATTTGGTTCTTCGTCTACGTGGTGG 1257730 Score = 127 bits (140), Expect = 3e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | ||||| || || || ||| | || | ||| | Sbjct 1258184 ATGCAAATCTTTGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAAGTCGAATCTGGA 1258125 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || | ||| |||||||| || || ||||| || ||||| |||||| Sbjct 1258124 GATACCATCGACAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCCGATCAA 1258065 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | ||||| |||||||| |||||||| || || |||| || ||| || || Sbjct 1258064 CAAAGATTGATTTTCGCAGGAAAGCAATTAGAAGACGGTAGAACCTTGTCAGACTACAAC 1258005 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||| ||||| ||| | || ||||| |||||| | || || ||||| ||| || Sbjct 1258004 ATCCAAAAGGAATCGACTCTTCACTTGGTCTTACGTCTTCGTGGAGGTATGCAAATTT 1257947 >seq1 Length=2409711 Score = 125 bits (138), Expect = 1e-23 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| ||||||||||| ||||| ||||||||| | || || ||||| ||||| Sbjct 640409 AAGATTCAAGACAAAGAAGGTATTCCACCCGATCAACAACGACTCATCTTTGCCGGAAAG 640350 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| |||| || || |||| ||| ||| || || |||||||| ||||| ||| | ||| Sbjct 640349 CAACTAGAAGACGGTAGAACCTTATCAGACTACAACATTCAAAAGGAATCCACTCTCCAT 640290 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 ||||| ||||| | ||||||| |||||| Sbjct 640289 TTGGTCCTACGTCTTAGAGGTGGAGCTAAAAA 640258 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| ||||| || ||||| || ||||| ||||||||| | || || ||||| ||||| Sbjct 640884 AAAATCCAAGACAAGGAAGGAATCCCACCGGATCAACAACGTCTAATCTTTGCTGGAAAG 640825 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| |||||| || | || | ||||| || || || ||||||||||| |||| Sbjct 640824 CAATTGGAGGATGGTAGGACTCTGTCTGATTACAACATCCAGAAAGAATCAACCCTGCAC 640765 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| |||| ||||| || Sbjct 640764 TTGGTACTACGTCTACGTGGTGGAAT 640739 Score = 104 bits (114), Expect = 4e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 124541 GCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGA 124600 |||||| || | ||||| |||| || || ||||| || | ||| |||| | ||| Sbjct 336551 GCAAATTTTCGTTAAGACCTTAACGGGTAAGACTATCACCCTCGAGGTTGAGTCTGGTGA 336492 Query 124601 TACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACA 124660 || || ||| | || ||||| ||||| || ||||| || ||||| |||||||| Sbjct 336491 CACTATCGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAACA 336432 Query 124661 AAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATAT 124720 ||| | || ||||| ||||| ||||| || ||| | |||| | ||||| || || Sbjct 336431 AAGATTAATCTTTGCTGGAAAGCAATTGGAAGATGGAAGAACCCTTTCGGATTACAACAT 336372 Query 124721 TCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||| ||||| ||| | |||||||| Sbjct 336371 TCAAAAGGAATCTACTCTTCATTTGGT 336345 >seq12 Length=1121745 Score = 107 bits (118), Expect = 3e-18 Identities = 187/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 205687 AATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAA 205746 |||||||| | ||||| |||||| ||||| ||| |||||||||||| ||| Sbjct 391567 AATTGATCCACTCCTTTGCCACTATAATCCGTATCACAATCCTCATATTTAGCACCGAAA 391626 Query 205747 TGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCA 205806 || | |||||| ||||||||||||||||||||||| |||||| |||||| | ||||| Sbjct 391627 TGTCTCCATTGGAAACCATAAACTGGACCTAAATCCCCTTCTCTTCTATGACCTAAACCT 391686 Query 205807 CGtttttttatatattttaatgatccattttcatcccaaatatggattcctttatttttt 205866 | || | ||| || |||||| ||||||||||||| ||| ||| | Sbjct 391687 CTAGATTCCAAGAATTCCTTCGAACCATTTCCATCCCAAATATGAATTTTCCTATCAGTC 391746 Query 205867 aGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTC 205926 | || || | || |||| || | ||||| | ||||||||| | || |||||| Sbjct 391747 AAAAGTTTGGAATCAGTTTCACCTTTGACGAACCAAAGTAATTCTTCCAAAACTCCTCTT 391806 Query 205927 CAAAACATTGATTTTGTTGTAAATAATGGAAA 205958 || | | ||| || || ||||| || || Sbjct 391807 GTGAAGACTCTTTTGGTAGTCAATAAAGGTAA 391838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455405078400