Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4 107 2e-18 seq15 86.0 5e-12 >seq4 Length=1327562 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || || |||||||||||||||||||||| ||| | || || Sbjct 1257748 ACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCTCAAAGTTCTACCGTCTTCC 1257807 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||||||||||| |||| ||||| || ||||| || || || |||||||||||| | Sbjct 1257808 AATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCCTCCTTGTCTTGA 1257867 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| ||||| | || | || || | ||||| || | || | || || Sbjct 1257868 ATCTTTGCCTTAACGTTATCAATAGTATCACTAGATTCGACTTCCAAAGTAATAGTCTTT 1257927 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| ||| || || ||||| ||||| Sbjct 1257928 CCGGTCAAAGTCTTGACGAAAATTTGCAT 1257956 >seq15 Length=848729 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || || || || ||||||||||||| ||| | || || Sbjct 552193 ACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGCTCAGAGTTCTACCGTCTTCC 552134 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | |||||| ||||| |||| | | || || |||||||| || || ||||||||| Sbjct 552133 AACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCTTGG 552074 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | |||||||| | ||| | ||| || Sbjct 552073 ATCTTGGCCTTGACATTGTCAATGGTGTCACCGGATTCGACCTCTAGGGTGATCGTCTTA 552014 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGC 118736 ||||||| || || || ||||| ||| Sbjct 552013 CCGGTCAAGGTCTTGACGAAAATTTGC 551987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830066899596