Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1 116 6e-21 seq15 89.7 8e-13 seq4 89.7 8e-13 >seq1 Length=2409711 Score = 116 bits (128), Expect = 6e-21 Identities = 100/121 (83%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 146068 TACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCAT 146126 ||||||||| | ||||||||| ||| || || || ||||| ||||| ||||| | ||| | Sbjct 336344 TACCAAATGAAGAGTAGATTCCTTTTGA-ATGTTGTAATCCGAAAGGGTTCTTCCATCTT 336402 Query 146127 CTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTT 146186 | ||||| ||||||||||| || |||||||| ||||| || ||||||||||| || |||| Sbjct 336403 CCAATTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTGTCTT 336462 Query 146187 G 146187 | Sbjct 336463 G 336463 Score = 100 bits (110), Expect = 4e-16 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATT-CTTTAGATATATTATAATCTG 146108 |||||||||||| | || |||||||| | ||| |||| |||| || || || || |||| Sbjct 640266 TCCACCTCTAAGACGTAGGACCAAATGGAGAGTGGATTCCTTTTGA-ATGTTGTAGTCTG 640324 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||||| | || |||| ||| ||||| ||||| || | || ||| ||||| || | Sbjct 640325 ATAAGGTTCTACCGTCTTCTAGTTGCTTTCCGGCAAAGATGAGTCGTTGTTGATCGGGTG 640384 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| |||||||| ||||| Sbjct 640385 GAATACCTTCTTTGTCTTG 640403 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | || | || |||||| || | || |||||||| || || ||||| | Sbjct 640740 TTCCACCACGTAGACGTAGTACCAAGTGCAGGGTTGATTCTTTCTGGATGTTGTAATCAG 640799 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||||| || | ||| || ||||| ||||||||||| || | | ||| |||||||| | Sbjct 640800 ACAGAGTCCTACCATCCTCCAATTGCTTTCCAGCAAAGATTAGACGTTGTTGATCCGGTG 640859 Query 146169 GAATTCCTTCTTTATCTTG 146187 | |||||||| || ||||| Sbjct 640860 GGATTCCTTCCTTGTCTTG 640878 >seq15 Length=848729 Score = 89.7 bits (98), Expect = 8e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | ||| ||||| || ||||| ||||| |||||||| | || || Sbjct 552193 ACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGCTCAGAGTTCTACCGTCTTCC 552134 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| |||||||| ||||||||||| || || ||||| |||||||| || ||||| Sbjct 552133 AACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCTTG 552075 >seq4 Length=1327562 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||| | ||| ||||| || | ||| ||||| || || || || ||||| Sbjct 1257958 CCTCCACGAAGACGTAAGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCTGAC 1258017 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | || |||||||| ||||| || |||||||||||||| ||||| || || Sbjct 1258018 AAGGTTCTACCGTCTTCTAATTGCTTTCCTGCGAAAATCAATCTTTGTTGATCGGGTGGG 1258077 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || || || Sbjct 1258078 ATTCCTTCCTTGTCCTG 1258094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743525814472960