Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq23 105 6e-18 >seq23 Length=563827 Score = 105 bits (116), Expect = 6e-18 Identities = 310/474 (65%), Gaps = 8/474 (2%) Strand=Plus/Plus Query 15980 GTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTAT 16039 ||||| || | ||| ||||| || ||||| ||||| |||||||| | || ||| | | Sbjct 139169 GTTTTACCCTGTAAAGAAATGTTCTCCATGAAATCGAAAGGATTCGTAGAGTTATAATGT 139228 Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099 || || || | | ||| | |||||| || || ||||| ||||| || |||| Sbjct 139229 TTGTCATTACCAAGAGAGACCAAAAGTCTATCAGCAACGAATTCAATATATTGACACATT 139288 Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159 || | | ||||||||| || | ||| | || ||| | || ||| | ||| Sbjct 139289 AATTTAGCGTTCATTCCAATGAGAGCGCAAGGTAAAGCGTCTCTCAAGAAAGCCTGTTCA 139348 Query 16160 ATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGG---TTTAAT 16216 || ||| |||||| | || ||| | | || ||| | ||| || | Sbjct 139349 ATTCCAACAGCTTCAGTAATGATAGCC---AAAACCGTATCTGGATGAGCTCTCTTCTTT 139405 Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 || || || | || |||||| ||||| ||| || ||||| || || || || Sbjct 139406 AAATGAGAGAATAATAAACAAGCGAAATCGGTATGTAAACCTTCATCTCTTGAAATCAAT 139465 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 ||||| ||||| || | ||||||||||| |||| || || ||||| || || | ||| Sbjct 139466 TCGTTAGAAAAAGTCAAACCTGGCATTAAACCTCTCTTCTTGATCCAGAAGATTGAAGCA 139525 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396 || || ||||| || || |||||||| || || || || || || |||| ||| | | Sbjct 139526 AAAGATCCAGAGAAAAAGATACCTTCGACGGCAGCGAAAGCTACTAATCTTTCAGCAAAG 139585 Query 16397 GTT-CTAtttttactttctatccattttttagcccaatttgctttttgtttAAC 16449 ||| || | | | || |||||| || |||||| | | | |||||||| || Sbjct 139586 GTTGCTTTGGTGTCATT-GATCCATCTTAAAGCCCATTCTCCCTTTTGTTTGAC 139638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511635771800