Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq15 98.7 8e-16 seq4 96.9 3e-15 >seq15 Length=848729 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||| |||||||| || ||||| ||| |||| | | |||| ||| Sbjct 552193 ACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGCTCAGAGTTCTACCGTCTTCC 552134 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| || || || ||||| | |||||||||||||| | || |||||||| Sbjct 552133 AACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCTTGG 552074 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| || || ||||| | ||| |||||||| Sbjct 552073 ATCTTGGCCTTGACATTGTCAATGGTGTCACCGGATTCGACCTCTAGGGTGATCGTCTTA 552014 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGC 45334 || |||| ||||| || || |||||| Sbjct 552013 CCGGTCAAGGTCTTGACGAAAATTTGC 551987 >seq4 Length=1327562 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC--AGTTGGCGATCGTCGT 45185 ||||| || || ||| ||||| ||||||||||| ||| || |||| | | |||| | Sbjct 1257748 ACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCTCAAAGTT--CTACCGTCTT 1257805 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 ||| ||||||||| || || || | || ||||| || || || | ||||||||||| Sbjct 1257806 CCAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCCTCCTTGTCTT 1257865 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 ||| ||| |||||| | | | || | | || || |||| ||||| |||| Sbjct 1257866 GAATCTTTGCCTTAACGTTATCAATAGTATCACTAGATTCGACTTCCAAAGTAATAGTCT 1257925 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || |||| |||||| || || |||||||| Sbjct 1257926 TTCCGGTCAAAGTCTTGACGAAAATTTGCAT 1257956 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCG 45181 ||| |||||||| || || ||||| || ||||||||||| || ||| | | || Sbjct 1257972 TAAGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCTGACAAGGTT--CTACCG 1258029 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || | ||| ||||| ||||| ||||| | ||||| ||||| || | || |||||| Sbjct 1258030 TCTTCTAATTGCTTTCCTGCGAAAATCAATCTTTGTTGATCGGGTGGGATTCCTTCCTTG 1258089 Query 45242 TCCGCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAAT 45300 ||| || |||| |||| || | | | | | || ||| || || || | || || Sbjct 1258090 TCCTGAA-TTTTGGCTTTGACGTTGTCGATGGTATCTCCAGATTCGACTTCGAGAGTGAT 1258148 Query 45301 CGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || |||| ||||| |||||||||||||| Sbjct 1258149 GGTCTTTCCTGTCAAGGTCTTGACAAAGATTTGCAT 1258184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074896656323