Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq4 123 2e-23 seq1 111 1e-19 >seq4 Length=1327562 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || ||||| | ||| |||| ||||| || ||||| |||||||||||||| ||| Sbjct 1257729 TCCACCACGTAGACGAAGAACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCT 1257788 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| ||| |||||||||||||| || ||| ||||||| | ||||||||| || Sbjct 1257789 CAAAGTTCTACCGTCTTCCAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGG 1257848 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || ||| | | ||| || | ||| ||| |||| | ||| Sbjct 1257849 AATTCCCTCCTTGTCTTGAATCTTTGCCTTAACGTTATCAATAGTATCACTAGATTCGAC 1257908 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || | || |||||||| || || || ||||||||||| Sbjct 1257909 TTCCAAAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 1257956 Score = 105 bits (116), Expect = 5e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTC-TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||||| || || | |||| |||| |||||| || ||||| ||||| ||||||||||| | Sbjct 1257958 CCTCCACGAAGACGTAAG-ACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCTGA 1258016 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| ||| ||||| ||||| || || || | || | |||||||||||| || Sbjct 1258017 CAAGGTTCTACCGTCTTCTAATTGCTTTCCTGCGAAAATCAATCTTTGTTGATCGGGTGG 1258076 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||||| || ||||| | || ||||| | | | || || || | ||| Sbjct 1258077 GATTCCTTCCTTGTCCTGAATTT-TGGCTTTGACGTTGTCGATGGTATCTCCAGATTCGA 1258135 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| | || || ||||| || || ||||| |||||||| Sbjct 1258136 CTTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTGACAAAGATTTGCAT 1258184 >seq1 Length=2409711 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 |||||||| ||||| || ||||| |||||||||||||| || | | ||| | | ||| Sbjct 336341 AAGTACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTTCCATC 336400 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||||||| || || ||| |||| | |||||||||||| || | |||||||| || Sbjct 336401 TTCCAATTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTGTC 336460 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| |||||| | | | ||||||||| | ||| || | |||||| | Sbjct 336461 TTGGATTTTGGCCTTGACATTGTCGATAGTGTCACCAGACTCAACCTCGAGGGTGATAGT 336520 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || || || || || || || ||||||||| Sbjct 336521 CTTACCCGTTAAGGTCTTAACGAAAATTTGC 336551 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || ||||| | ||||||| ||| || ||||||||||| || |||||||| || | Sbjct 640741 TCCACCACGTAGACGTAGTACCAAGTGCAGGGTTGATTCTTTCTGGATGTTGTAATCAGA 640800 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || ||| ||| |||||||| || || ||| |||| || | |||||||||| || Sbjct 640801 CAGAGTCCTACCATCCTCCAATTGCTTTCCAGCAAAGATTAGACGTTGTTGATCCGGTGG 640860 Query 18218 CACGCCTTCCTTATC 18232 | |||||||| || Sbjct 640861 GATTCCTTCCTTGTC 640875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343708734935