Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq28 262 4e-65 seq4 122 8e-23 seq15 111 1e-19 seq1 102 7e-17 seq23 93.3 4e-14 >seq28 Length=226377 Score = 262 bits (290), Expect = 4e-65 Identities = 573/853 (67%), Gaps = 4/853 (0%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||| || || | ||||| ||||| || || || | |||| || | ||||| Sbjct 217740 GCGATGGAAGCCAAGTTGCAGACGGCTACTTCATCCGGAGCACTGTATTCGATGATTTCA 217681 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTC-GATTGCA 23139 ||||| || || ||||| || || || | || ||||||| || |||| | ||||| Sbjct 217680 GTACAAAGGTTTGAGCACTTGATGGTTCCTAGGTTCTTCTGGTTACTCTTTCTGTTTGCA 217621 Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199 | |||||||| |||||||| || | || || ||| || | || | ||| || Sbjct 217620 -GCGTCCTTGTAAAGCATGTAAGGATTTCCAGTTTCGGTTTGAGCTTCCAAGATGGCATA 217562 Query 23200 CCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 ||| | | ||||| | || || | | || ||||| |||||||| ||| Sbjct 217561 CCAAAGCTTTTGAGCTTTGACGGTTCTCTTGGCTCTACCTTCGGATTCGTACTTGGTGTA 217502 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 | || || ||||| | ||||| ||| || || || || ||| ||||| | Sbjct 217501 AAGAGCTTCGAATTCCTCTCCGTAGACGTCAGCGAGACCTGGGCATTCTCCAGGACAAAG 217442 Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379 ||| ||| || || || || | |||| || || || || ||||| ||||| Sbjct 217441 TAGAGACCAATCCTCGTTCTTCTCTACTCTCTTCATGAAGAGGTCTGGAATCCAAAGAGC 217382 Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439 |||||||||||| | ||| || || ||||| || ||| |||||| | |||||| || Sbjct 217381 GTAGAACAGTTCTCTGGCACGAACTTCCTCCTTTCCGTGGTTCTTACGTAGATCCAAGAA 217322 Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 || || ||||| | |||||| ||||| | ||| | |||||| || || || | ||| || Sbjct 217321 TTCGAAGACGTCTGAATGCCATGGCTCCAAGTAGATGGCAAAGGCACCTGGACGCTTGTT 217262 Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 || || ||||||||||| | || ||||||||||| || | |||||| || |||| ||| Sbjct 217261 TCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGTAGACACGTAGCATGGGAACGATACC 217202 Query 23560 GTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619 |||||| || || || | || || || | |||| |||||| |||| Sbjct 217201 GTTGGAGAATCCATTGGTTCCAGCAATGTAAGATCCAGTTCCACGAATGTTGTGGACGTT 217142 Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGAT 23679 || ||| || || || | | || || ||||| || || || |||||||||||||| Sbjct 217141 GAGACCGATTCCACCTGCAGTCTTGGAGATCATGGCACACGTCTTGAGAGTGTCGTAGAT 217082 Query 23680 GCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGG 23739 || |||||| ||| || || | | |||||||||||| ||||||||||| | | || Sbjct 217081 TCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAAACAGGAAGACATTTGAGAATGAGG 217022 Query 23740 CGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT-AAAGTATCCATTCGACATTAGAT 23798 || | || ||| || || || ||||| || ||||| | | | ||||| || | Sbjct 217021 AGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGGGTGAAAGTCTTC-TCGGACATGAGGT 216963 Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCA 23858 | || || |||||||| || | ||| ||| || || || |||||||| ||||| | Sbjct 216962 TATAAGTCTCGATGGCCTTTTCGACGTCGGTTCCATGGATTCCAATGGCGACACGCATGA 216903 Query 23859 TCATGTATTGAGG 23871 ||||| |||||| Sbjct 216902 GCATGTGTTGAGG 216890 >seq4 Length=1327562 Score = 122 bits (134), Expect = 8e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||| |||| || || || || || | || || ||| | Sbjct 1257956 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAGACTATTACTTTGGAAGTCGAATCTAGT 1257897 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || |||| | | || ||| | | ||||||| || | || || || || Sbjct 1257896 GATACTATTGATAACGTTAAGGCAAAGATTCAAG-ACAAGGAGGGAATTCCACCTGATCA 1257838 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||||| || || ||||| ||||| ||||||||| || ||| |||||||||| || Sbjct 1257837 ACAACGTCTTATCTTTGCTGGAAAACAATTGGAAGACGGTAGAACTTTGAGCGATTACAA 1257778 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||||||| ||||| || |||||| |||| ||| Sbjct 1257777 CATTCAAAAGGAATCCACCCTTCATTTGGTTCTT 1257744 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||||||| || || ||||| |||| || ||| | Sbjct 1258184 ATGCAAATCTTTGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAAGTCGAATCTGGA 1258125 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | |||||| | ||| |||||||||||| | || ||||| || Sbjct 1258124 GATACCATCGACAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCCGATCAA 1258065 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || ||||| || || || || |||||| || || || || || ||| Sbjct 1258064 CAAAGATTGATTTTCGCAGGAAAGCAATTAGAAGACGGTAGAACCTTGTCAGACTACAAC 1258005 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTA 31406 || ||||| |||||||||||||| |||| |||| Sbjct 1258004 ATCCAAAAGGAATCGACTCTTCACTTGGT-CTTA 1257972 >seq15 Length=848729 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 31195 GCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGA 31254 |||||||||||| ||||| |||| || || ||||||||| | || || ||| | || Sbjct 551987 GCAAATTTTCGTCAAGACCTTGACCGGTAAGACGATCACCCTAGAGGTCGAATCCGGTGA 552046 Query 31255 CAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCA 31314 || | || | ||||| | || ||||||||||| | || |||||||| || Sbjct 552047 CACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGACCAACA 552106 Query 31315 GCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACAT 31374 | | || || ||||| ||||||||||||||| || ||| |||||||||| || || Sbjct 552107 AAGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGTAGAACTCTGAGCGATTACAATAT 552166 Query 31375 TCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || ||||| ||||| || |||| ||| Sbjct 552167 CCAGAAGGAATCCACTCTGCACTTGGTCCTT 552197 >seq1 Length=2409711 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 31195 GCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGA 31254 |||||||||||| ||||| | || || || || |||||| |||| ||||| | || Sbjct 336551 GCAAATTTTCGTTAAGACCTTAACGGGTAAGACTATCACCCTCGAGGTTGAGTCTGGTGA 336492 Query 31255 CAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCA 31314 || | |||| | ||||| | ||| ||||||||||| | || || || || || Sbjct 336491 CACTATCGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAACA 336432 Query 31315 GCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACAT 31374 | |||| || ||||| || || |||||||| | || | ||||| ||||| Sbjct 336431 AAGATTAATCTTTGCTGGAAAGCAATTGGAAGATGGAAGAACCCTTTCGGATTACAACAT 336372 Query 31375 TCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||| ||||| ||||||||| |||||||| Sbjct 336371 TCAAAAGGAATCTACTCTTCATTTGGTACTT 336341 >seq23 Length=563827 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTA 57977 |||| ||| ||| | | | |||||| || | ||| || || || || || || || Sbjct 139629 AAGGGAGAATGGGCTTTAAGATGGATCAATGACACCAAAGCAACCTTTGCTGAAAGATTA 139570 Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037 | || ||||| |||||||||||||| || || || || ||||| |||| || ||| Sbjct 139569 GTAGCTTTCGCTGCCGTCGAAGGTATCTTTTTCTCTGGATCTTTTGCTTCAATCTTCTGG 139510 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 || ||||| | || | ||||| || |||| ||| ||||| ||||| || | || Sbjct 139509 ATCAAGAAGAGAGGTTTAATGCCAGGTTTGACTTTTTCTAACGAATTGATTTCAAGAGAT 139450 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCA 58138 || ||| | ||||| ||||| || || || | | |||||| Sbjct 139449 GAAGGTTTACATACCGATTTCGCTTGTTTATTATTCTCTCA 139409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766048958960