Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq28 338 8e-88 seq23 125 9e-24 >seq28 Length=226377 Score = 338 bits (374), Expect = 8e-88 Identities = 1157/1782 (65%), Gaps = 45/1782 (3%) Strand=Plus/Minus Query 62045 TGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 62104 ||||||||||| | | || ||| ||| | || | | |||||| |||| || || | Sbjct 218647 TGTGAATTGAACAGCATTGGCTGCAGGTCTAGTTCTCAAATAGTAAGTTCCAGTCTTCAA 218588 Query 62105 ACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTAT 62164 ||| |||| ||||| || ||||| || |||| || | ||| | | || Sbjct 218587 ACCCTTCTTCCAACCGTAGAAGTGCATTGAAGTAAGTTGACCGAAAGTAGGAGCGGATAG 218528 Query 62165 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62224 |||||| |||| ||||||| |||| ||||| || || || || |||||||| | || Sbjct 218527 ATGGATGTTCAAAGATTGAGATTGACAAATGAAAGCACCTCTATCAGCAGCCATATCGAT 218468 Query 62225 GATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT-TCTGGAA 62283 ||| | ||| || | ||||||||||| ||| || || | ||| || ||| ||||||| Sbjct 218467 GATAGACTTCTGAGGAATTTCCCAAACAGTCTTGTATAAAGCCTTGAT-TCTATCTGGAA 218409 Query 62284 GGTTTG-TA--TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCAT 62340 || || || ||||| |||||||||| | || ||||| ||||| ||| |||| Sbjct 218408 TTCCTGGTACGTTTTGAATCGATCCACCATGAGCGATGATCCTGTTCTTCATCGATTCAT 218349 Query 62341 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTC 62400 |||||| | ||| || |||| | | || || || ||||||||||||| Sbjct 218348 CCCATAAACCTTGTTCGACCAATTCTCTCAACAACCAAGGATTGACGACTTGGAATTCTC 218289 Query 62401 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62460 ||| ||| ||||| |||| ||| || || || || ||||| | | || || | Sbjct 218288 CAGCCAAGACTCTACGAGAGTAGATGTTTGAAGTGTAAGGTTCGAAGCATTCGTTGAAAC 218229 Query 62461 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62520 |||| ||||||| ||| || ||||| ||||| || || | | | | || | |||| Sbjct 218228 CCAAGATTTGAGAAGTAGAGGCAGTTGGCATTGGAGCTAGAAGAAGAGAGTTACGTAGAC 218169 Query 62521 CGTATGTTCTG--ATTTTATCTTTTA--GATGTTCCCAATTCCAAAGATCCGACGGTACA 62576 | ||||| || || || | || | || || ||||| ||||||||| || || Sbjct 218168 C--ATGTTTTGCCATCTTTGCCTTCAATGAAGT--CCAATCCCAAAGATCTGAAGGAGTG 218113 Query 62577 ACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATC 62635 ||| ||||| || || | ||| || | || ||| | || ||| Sbjct 218112 ACACCCCACATGTCGTATTGAAGTTCTCCTTGACTTGCTGGACTTCCCT-CGTAAGTAGA 218054 Query 62636 ATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCC---TCTAATGCACCGTAATAAAT 62692 || |||||||| | ||||||| || | | ||| || || || ||| ||| || Sbjct 218053 GTAAGGTCCTTCGATTTCAGCTAATT--CGA-TCGAACGTTCCAAAGCGGCGTGATAGAT 217997 Query 62693 GGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAA 62752 |||||| ||||| | || || | | ||||| || || || |||||| | Sbjct 217996 GGTTTCGAAGATTTGGACGTTGAGCTTACGAGCTTCTGGAGAGTCGAAAGGATAACCCAT 217937 Query 62753 GAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62812 || || || || || |||| ||||||||||| || ||||| || | ||| | || Sbjct 217936 GATCATGAAAGCATCAGCTAGACCTTGAACACCGATTCCGATTGGACGATGACGGAAGTT 217877 Query 62813 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 62872 || |||||| | ||| || || || || || || || || ||||| |||| Sbjct 217876 GGAACGACGAGCTTCCTCGACAGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTCC 217817 Query 62873 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-TCGCCCATCTAT-TACA 62930 ||| || ||| || ||| | |||| || || ||| ||| || Sbjct 217816 ACAAATGACCTTGGAGAC---CTTGTG---GAGACGTTCGAAGTCGTAGGTCTTGGTAGC 217763 Query 62931 AACAT-GTTCAA---TGCAACAG------ATGCCAGATTACACACGGCTACCTCATTAGC 62980 | | | | | || || || || | |||| || || |||||||| |||| | Sbjct 217762 AGCGTCGATGAAGGTTGGAAGAGCGATGGAAGCCAAGTTGCAGACGGCTACTTCATCCGG 217703 Query 62981 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTG 63040 | | |||| || || ||||| ||||| || |||||||| ||||||| || | Sbjct 217702 AGCACTGTATTCGATGATTTCAGTACAAAGGTTTGAGCACTTGATGGTTCCTAGGTTCTT 217643 Query 63041 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 63100 || ||||||||| |||| || ||||| ||||| ||| | ||| | |||||||| | Sbjct 217642 CTGGTTACTCTTTCTGTTTGCAGCGTCCTTGTAAAGCATGTAAGGATTTCCAGTTTCGGT 217583 Query 63101 CTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCT 63160 |||| ||| | || || | ||| | | |||| || | | ||| ||| | Sbjct 217582 TTGAGCTTCCAAGATGGCATACCAAAGCTTTTGAGCTTTGACGGTTCTCTTGGCTCTACC 217523 Query 63161 TTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCT 63220 ||| |||||| || || | |||||| || ||||| | || | | | | Sbjct 217522 TTCGGATTCGTACTTGGTGTAAAGAGCTTCGAATTCCTCTCCGTAGACGTCAGCGAGACC 217463 Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 || ||||| | ||||| | | ||||| || ||| | || |||| ||||| || Sbjct 217462 TGGGCATTCTCCAGGACAAAGTAGAGACCAATCCTCGTTCTTCTCTACTCTCTTCATGAA 217403 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 ||| || |||||||||||||| || || ||||| | | | |||||| ||||| Sbjct 217402 GAGGTCTGGAATCCAAAGAGCGTAGAACAGTTCTCTGGCACGAACTTCCTCCTTTCCGTG 217343 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||| ||||| | ||| | | | || |||||||| || |||||||| ||||| Sbjct 217342 GTTCTTACGTAGATCCAAGAATTCGAAGACGTCTGAATGCCATGGCTCCAAGTAGATGGC 217283 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | || || || ||||||||||| ||||| | ||||||||| ||||| || || || Sbjct 217282 AAAGGCACCTGGACGCTTGTTTCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGTAGAC 217223 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | | ||| |||| |||||||| || | |||||||| || | || || |||| | Sbjct 217222 ACGTAGCATGGGAACGATACCGTTGGAGAATCCATTGGTTCCAGCAATGTAAGATCCAGT 217163 Query 63521 GGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 ||||||| || | ||| ||||| ||||| ||||| | || ||||| | || Sbjct 217162 TCCACGAATGTTGTGGACGTTG--AGACCGATTCCACCTGCAGTCTTGGAGATCATGGCA 217105 Query 63579 CATCGT-TTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAA 63637 || ||| || | ||||| ||||| ||||| ||| || || ||||| | | | || Sbjct 217104 CA-CGTCTTGAGAGTGTCGTAGATTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAA 217046 Query 63638 ACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63697 |||| ||||||||| | ||| |||||| || || || | || ||||||||||| || Sbjct 217045 ACAGGAAGACATTTGAGAATGAGGAGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGGGT 216986 Query 63698 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63757 || || || || | || || || ||||| || || || | || | ||| Sbjct 216985 GAAAGTCTTCTCGGACATGAGGTTATAAGTCTCGATGGCCTTTTCGACGTCGGTTCCATG 216926 Query 63758 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799 ||||| | ||||||||||| | |||||| ||||| | ||| Sbjct 216925 GATTCCAATGGCGACACGCATGAGCATGTGTTGAGGACGTTC 216884 >seq23 Length=563827 Score = 125 bits (138), Expect = 9e-24 Identities = 335/506 (66%), Gaps = 11/506 (2%) Strand=Plus/Plus Query 33325 TAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAA 33384 ||||||| || | || || || || ||||||||||| || ||||| ||| || ||| Sbjct 139167 TAGTTTTACCCTGTAAAGAAATGTTCTCCATGAAATCGAAAGGATTCGTAGAGTTATAA- 139225 Query 33385 tttttttAAATCCCAATTCAGAAATCAA---TCTATCTGCGACGAATTCTATATATGTTT 33441 | ||| | | | |||| ||| | ||| |||||| || |||||||| |||||| Sbjct 139226 TGTTTGTCATTACCAAG--AGAGACCAAAAGTCTATCAGCAACGAATTCAATATATTGAC 139283 Query 33442 TCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGT-AAGAAATTCT 33500 ||| | || | |||||||| ||||| || | ||| | | |||||| || Sbjct 139284 ACATTAATTTAGCGTTCATTCCAATGAGAGCGCAAGGTAAAGCGTCTCTCAAGAAAGCCT 139343 Query 33501 TGTTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGT 33560 ||||||| || || | || || ||| ||| || ||| | | | | Sbjct 139344 -GTTCAATTCCAACAGCTTCAGTAATGATAGCCAAAACCGTATCTGGATGAGCTCTCTTC 139402 Query 33561 AATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATT 33620 |||||| || | ||||| ||||||||| || | ||| || ||||| ||| Sbjct 139403 TTTAAATGAGAGAATAATAAACAAGCGAAATCGGTATGTAAACCTTCATCTCTTGAAATC 139462 Query 33621 AATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAA 33680 |||||||||||||| || | || ||||||| || | ||| || | ||| || || ||| Sbjct 139463 AATTCGTTAGAAAAAGTCAAACCTGGCATTAAACCTCTCTTCTTGATCCAGAAGATTGAA 139522 Query 33681 GCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA 33740 || || ||||| || || ||||| ||||| || ||||| || || | | ||| || || Sbjct 139523 GCAAAAGATCCAGAGAAAAAGATACCTTCGACGGCAGCGAAAGCTACTAATCTTTCAGCA 139582 Query 33741 TAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAA 33797 | || | |||||| ||||| || |||||| || |||| | ||| || Sbjct 139583 AAGGTTGCTTTGGTGTCATTGATCCATCTTAAAGCCCATTCTCCCTTTTGTTTGACGACT 139642 Query 33798 GGCATCGTTTCTATGGCATTAAAGAG 33823 || ||||| |||| ||||| |||||| Sbjct 139643 GGAATCGTCTCTAAGGCATCAAAGAG 139668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817104018640