Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq23 111 1e-19 >seq23 Length=563827 Score = 111 bits (122), Expect = 1e-19 Identities = 223/330 (68%), Gaps = 12/330 (4%) Strand=Plus/Plus Query 11461 TCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATC 11520 |||||| || |||||||| ||||| ||| ||||||| | ||||| || || ||| | Sbjct 139255 TCTATCAGCAACGAATTCAATATATTGACACATTAATTTAGCGTTCATTCCAATGAGAGC 139314 Query 11521 CACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGA 11580 || | ||| || |||| || ||| ||| || ||| || ||| | || || | Sbjct 139315 GCAAGGTAAAGCGTCTCTCAAGAAAGCCTGTTCAATTCCAACAGCTTCAGTAATGATAGC 139374 Query 11581 CGTTATAACTTCCTTAGATGGTGGATGTAA------TAAATGTTTAAACATTAAACACGC 11634 | | ||| | || ||| || | |||||| || | |||||| || Sbjct 139375 C---AAAAC---CGTATCTGGATGAGCTCTCTTCTTTAAATGAGAGAATAATAAACAAGC 139428 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 ||||| |||||||||||| ||||| || | ||| |||||||| || || || || Sbjct 139429 GAAATCGGTATGTAAACCTTCATCTCTTGAAATCAATTCGTTAGAAAAAGTCAAACCTGG 139488 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||| || |||| || || ||||| || || | |||||| || ||||| || || || || Sbjct 139489 CATTAAACCTCTCTTCTTGATCCAGAAGATTGAAGCAAAAGATCCAGAGAAAAAGATACC 139548 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTC 11784 || || || || || ||||||| |||||| Sbjct 139549 TTCGACGGCAGCGAAAGCTACTAATCTTTC 139578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524431036720