Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq28 338 8e-88 >seq28 Length=226377 Score = 338 bits (374), Expect = 8e-88 Identities = 1195/1845 (65%), Gaps = 45/1845 (2%) Strand=Plus/Minus Query 64838 TGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 64897 ||||||||||| | | || ||| ||| | || | | |||||| |||| || || | Sbjct 218647 TGTGAATTGAACAGCATTGGCTGCAGGTCTAGTTCTCAAATAGTAAGTTCCAGTCTTCAA 218588 Query 64898 ACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTAT 64957 ||| |||| ||||| || ||||| || |||| || | ||| | | || Sbjct 218587 ACCCTTCTTCCAACCGTAGAAGTGCATTGAAGTAAGTTGACCGAAAGTAGGAGCGGATAG 218528 Query 64958 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 65017 |||||| |||| ||||||| |||| ||||| || || || || |||||||| | || Sbjct 218527 ATGGATGTTCAAAGATTGAGATTGACAAATGAAAGCACCTCTATCAGCAGCCATATCGAT 218468 Query 65018 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT-TCTGGAA 65076 ||| | ||| || ||||||||||||| ||| || || | ||| || ||| ||||||| Sbjct 218467 GATAGACTTCTGAGGAATTTCCCAAACAGTCTTGTATAAAGCCTTGAT-TCTATCTGGAA 218409 Query 65077 GGTTTG-TA--TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 65133 || || || ||||| |||||||||| || || ||||| ||||| ||| |||| Sbjct 218408 TTCCTGGTACGTTTTGAATCGATCCACCATGAGCGATGATCCTGTTCTTCATCGATTCAT 218349 Query 65134 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 65193 |||||| | ||| || |||| | | ||||| || ||||| ||||||| Sbjct 218348 CCCATAAACCTTGTTCGACCAATTCTCTCAACAACCAAGGATTGACGACTTGGAATTCTC 218289 Query 65194 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 65253 ||| ||| ||||| |||| ||| || || || || ||||| | | || || | Sbjct 218288 CAGCCAAGACTCTACGAGAGTAGATGTTTGAAGTGTAAGGTTCGAAGCATTCGTTGAAAC 218229 Query 65254 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 65313 |||| ||||||| ||| || ||||| ||||| || || | | | | || | |||| Sbjct 218228 CCAAGATTTGAGAAGTAGAGGCAGTTGGCATTGGAGCTAGAAGAAGAGAGTTACGTAGAC 218169 Query 65314 CGTATGTTCTG--ATTTTATCTTTTA--GAGGTTCCCAATTCCAAAGATCCGACGGTACA 65369 | ||||| || || || | || | || || ||||| ||||||||| || || Sbjct 218168 C--ATGTTTTGCCATCTTTGCCTTCAATGAAGT--CCAATCCCAAAGATCTGAAGGAGTG 218113 Query 65370 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATC 65428 || ||| || || | ||| || | || ||| | || ||| Sbjct 218112 ACACCCCACATGTCGTATTGAAGTTCTCCTTGACTTGCTGGACTTCCCT-CGTAAGTAGA 218054 Query 65429 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCT-CTAATGCACCGTAATAAATGG 65487 ||| |||||||| | ||||||| ||| | | | | | || || ||| ||| |||| Sbjct 218053 GTAAGGTCCTTCGATTTCAGCTAATTCG-ATCGAACGTTCCAAAGCGGCGTGATAGATGG 217995 Query 65488 TTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGA 65547 |||||||||| | || || | | ||||| | || || |||||| | || Sbjct 217994 TTTCGAAGATTTGGACGTTGAGCTTACGAGCTTCTGGAGAGTCGAAAGGATAACCCATGA 217935 Query 65548 GAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 65607 || || || || |||| ||||||||||| || ||||| || | ||| | || | Sbjct 217934 TCATGAAAGCATCAGCTAGACCTTGAACACCGATTCCGATTGGACGATGACGGAAGTTGG 217875 Query 65608 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 65667 | |||||| | ||| || || || || || || || || ||||| |||| Sbjct 217874 AACGACGAGCTTCCTCGACAGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTCCAC 217815 Query 65668 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-TCGCTCATCTAT-TACAAA 65725 ||| || ||| || ||| | |||| || || ||| ||| || | Sbjct 217814 AAATGACCTTGGAGAC---CTTGTG---GAGACGTTCGAAGTCGTAGGTCTTGGTAGCAG 217761 Query 65726 CAT-GTTCAA---TGCAACAG------ATGCCAGATTACAAACGGCTACCTCATTAGCAT 65775 | | | | || || || || | |||| || || |||||||| |||| | | Sbjct 217760 CGTCGATGAAGGTTGGAAGAGCGATGGAAGCCAAGTTGCAGACGGCTACTTCATCCGGAG 217701 Query 65776 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 65835 | |||| || || ||||| ||||| || |||||||||||||||| || | | Sbjct 217700 CACTGTATTCGATGATTTCAGTACAAAGGTTTGAGCACTTGATGGTTCCTAGGTTCTTCT 217641 Query 65836 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 65895 | ||||||||| |||| || ||||| ||||| ||| | ||| | |||||||| | | Sbjct 217640 GGTTACTCTTTCTGTTTGCAGCGTCCTTGTAAAGCATGTAAGGATTTCCAGTTTCGGTTT 217581 Query 65896 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTT 65955 ||| ||| | || || | ||| | | |||| || | | ||| ||| || Sbjct 217580 GAGCTTCCAAGATGGCATACCAAAGCTTTTGAGCTTTGACGGTTCTCTTGGCTCTACCTT 217521 Query 65956 CTCTTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 66013 | |||||| | ||||| | | |||||| || ||||| | || | | | || Sbjct 217520 CGGATTCGTACTTGGTGTAAAGAGC--TTCGAATTCCTCTCCGTAGACGTCAGCGAGACC 217463 Query 66014 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 66073 || ||||| | ||||| | | ||||| || ||| | || |||| ||||| || Sbjct 217462 TGGGCATTCTCCAGGACAAAGTAGAGACCAATCCTCGTTCTTCTCTACTCTCTTCATGAA 217403 Query 66074 GAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGT 66133 ||| || |||||||||||||| || | ||||||| | | |||||| ||||| Sbjct 217402 GAGGTCTGGAATCCAAAGAGCGTAGAACAGTTCTCTGGCACGAACTTCCTCCTTTCCGTG 217343 Query 66134 ATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGC 66193 ||||| ||||| | ||| | | | || ||||||| || |||||||| ||||| Sbjct 217342 GTTCTTACGTAGATCCAAGAATTCGAAGACGTCTGAATGCCATGGCTCCAAGTAGATGGC 217283 Query 66194 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 66253 | | || || || ||||||||||| ||||| | ||||||||| ||||| || || || Sbjct 217282 AAAGGCACCTGGACGCTTGTTTCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGTAGAC 217223 Query 66254 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACT 66313 | | ||| |||| ||||| ||||| |||||||| || | || || |||| | Sbjct 217222 ACGTAGCATGGGAACGATACCGTTGGAGAATCCATTGGTTCCAGCAATGTAAGATCCAGT 217163 Query 66314 TGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 66371 | ||||||| || | ||| ||||| ||||| ||||| | || ||||| | || Sbjct 217162 TCCACGAATGTTGTGGACGTTG--AGACCGATTCCACCTGCAGTCTTGGAGATCATGGCA 217105 Query 66372 CATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 66430 || ||| || | || || ||||| || || || || ||| ||||| | | | || Sbjct 217104 CA-CGTCTTGAGAGTGTCGTAGATTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAA 217046 Query 66431 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 66490 |||| ||||||||| | || |||||| || || || | || ||||||||||| || Sbjct 217045 ACAGGAAGACATTTGAGAATGAGGAGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGGGT 216986 Query 66491 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 66550 || || || || | || || || ||||| || || || | || | ||| Sbjct 216985 GAAAGTCTTCTCGGACATGAGGTTATAAGTCTCGATGGCCTTTTCGACGTCGGTTCCATG 216926 Query 66551 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 66610 ||||| | ||||||||||| | |||||| ||||| | ||| ||| ||| || || Sbjct 216925 GATTCCAATGGCGACACGCATGAGCATGTGTTGAGGACGTTCGGCGACCTTTCCATTGAT 216866 Query 66611 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 66655 | | | ||| ||| | || | ||| || ||||| || |||| Sbjct 216865 TCGTAGAAGGTAAGATCTCTCAAGAGTCTTGAAACCGAAGAAGTT 216821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172281688920