Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq28 416 4e-111 >seq28 Length=226377 Score = 416 bits (460), Expect = 4e-111 Identities = 1207/1840 (66%), Gaps = 35/1840 (2%) Strand=Plus/Minus Query 78717 TGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 78776 ||||||||||| | | || ||| ||| | || | | |||||| |||| || || | Sbjct 218647 TGTGAATTGAACAGCATTGGCTGCAGGTCTAGTTCTCAAATAGTAAGTTCCAGTCTTCAA 218588 Query 78777 ACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTAT 78836 ||| |||| |||||||| ||||| || |||| || | ||| | | || Sbjct 218587 ACCCTTCTTCCAACCGTAGAAGTGCATTGAAGTAAGTTGACCGAAAGTAGGAGCGGATAG 218528 Query 78837 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 78896 |||||| |||| ||||||| |||| ||||| || || || || |||||||| | || Sbjct 218527 ATGGATGTTCAAAGATTGAGATTGACAAATGAAAGCACCTCTATCAGCAGCCATATCGAT 218468 Query 78897 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT-TCTGGAA 78955 ||| | ||| || ||||||||||||| ||| || || | ||| || ||| ||||||| Sbjct 218467 GATAGACTTCTGAGGAATTTCCCAAACAGTCTTGTATAAAGCCTTGAT-TCTATCTGGAA 218409 Query 78956 GGTTTG-TA--TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCAT 79012 || || || ||||| |||||||||| || || ||||| ||||| ||| ||||| Sbjct 218408 TTCCTGGTACGTTTTGAATCGATCCACCATGAGCGATGATCCTGTTCTTCATCGATTCAT 218349 Query 79013 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 79072 |||||| | ||| || |||| | | ||||| || ||||| ||||||| Sbjct 218348 CCCATAAACCTTGTTCGACCAATTCTCTCAACAACCAAGGATTGACGACTTGGAATTCTC 218289 Query 79073 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTC 79132 ||| ||| ||||| |||| ||| || || || || ||||| | |||| || | Sbjct 218288 CAGCCAAGACTCTACGAGAGTAGATGTTTGAAGTGTAAGGTTCGAAGCATTCGTTGAAAC 218229 Query 79133 CCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 79192 |||| ||||||| ||| || || |||||||| || || | | | | || | |||| Sbjct 218228 CCAAGATTTGAGAAGTAGAGGCAGTTGGCATTGGAGCTAGAAGAAGAGAGTTACGTAGAC 218169 Query 79193 CGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAAC 79250 | ||| | || || || | || | || ||||||||||||||| || || || Sbjct 218168 C--ATGTTTTGCCATCTTTGCCTTCAATGAAGTCCAATCCCAAAGATCTGAAGGAGTGAC 218111 Query 79251 ATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATA 79310 | ||| | || ||||| || || | ||| || ||| ||| || || Sbjct 218110 ACCCCACATGTCGTATTGAAGTTCTCCTTGACTTGCTGGACTTCCCTCGTAAGTAGAGTA 218051 Query 79311 AGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCT-CTAATGCTCCGTAATAAATGGTTT 79369 ||||||||| |||| |||||||| | | | | | || || ||| ||| ||||||| Sbjct 218050 AGGTCCTTCGATTTCAGCTAATTCG-ATCGAACGTTCCAAAGCGGCGTGATAGATGGTTT 217992 Query 79370 CGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAA 79429 |||| || | ||||| | | |||||| | || || |||||| | || | Sbjct 217991 CGAAGATTTGGACGTTGAGCTTACGAGCTTCTGGAGAGTCGAAAGGATAACCCATGATCA 217932 Query 79430 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAA 79489 | || || || |||| ||||||||||| || ||||| || | ||| | || ||| Sbjct 217931 TGAAAGCATCAGCTAGACCTTGAACACCGATTCCGATTGGACGATGACGGAAGTTGGAAC 217872 Query 79490 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTA 79549 |||||| | ||| || || || || || || || || ||||| || | | Sbjct 217871 GACGAGCTTCCTCGACAGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTCCACAAA 217812 Query 79550 TTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA-TCGTCCATCTAT-TACAAACAT 79607 | || ||| || ||| | |||| || || |||| ||| || | | | Sbjct 217811 TGACCTTGGAGAC---CTTGTG---GAGACGTTCGAAGTCGTAGGTCTTGGTAGCAGCGT 217758 Query 79608 --------GTTCAACG--CGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 79657 ||| | | ||| || |||| || || |||||||| |||| | | | Sbjct 217757 CGATGAAGGTTGGAAGAGCGATGGAAGCCAAGTTGCAGACGGCTACTTCATCCGGAGCAC 217698 Query 79658 CATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGAT 79717 |||| || |||||||| || ||||| ||||| |||||||||| || | || | Sbjct 217697 TGTATTCGATGATTTCAGTACAAAGGTTTGAGCACTTGATGGTTCCTAGGTTCTTCTGGT 217638 Query 79718 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAG 79777 |||||||| |||| || ||||| ||||| ||| | ||| | |||||||| | |||| Sbjct 217637 TACTCTTTCTGTTTGCAGCGTCCTTGTAAAGCATGTAAGGATTTCCAGTTTCGGTTTGAG 217578 Query 79778 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTC 79837 ||| | || || | ||| | | |||| || | | |||| ||| ||| Sbjct 217577 CTTCCAAGATGGCATACCAAAGCTTTTGAGCTTTGACGGTTCTCTTGGCTCTACCTTCGG 217518 Query 79838 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGAC 79897 |||||| | || || | |||||| || ||||| | || || | | || || | Sbjct 217517 ATTCGTACTTGGTGTAAAGAGCTTCGAATTCCTCTCCGTAGACGTCAGCGAGACCTGGGC 217458 Query 79898 ATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGAT 79957 |||| ||||||| | | ||||| || | | | || ||||| ||||| ||||| | Sbjct 217457 ATTCTCCAGGACAAAGTAGAGACCAATCCTCGTTCTTCTCTACTCTCTTCATGAAGAGGT 217398 Query 79958 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017 | |||||||||||||| || || ||||||| | | ||||| ||||| |||| Sbjct 217397 CTGGAATCCAAAGAGCGTAGAACAGTTCTCTGGCACGAACTTCCTCCTTTCCGTGGTTCT 217338 Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077 | ||||| | ||| | | | || |||||||| || |||||||| ||||| | Sbjct 217337 TACGTAGATCCAAGAATTCGAAGACGTCTGAATGCCATGGCTCCAAGTAGATGGCAAAGG 217278 Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 80137 | || || || ||||||||||| ||||| | ||||||||| ||||| || || || | | Sbjct 217277 CACCTGGACGCTTGTTTCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGTAGACACGTA 217218 Query 80138 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197 ||| |||| ||||| ||||| |||||||| || | || || |||| | ||| Sbjct 217217 GCATGGGAACGATACCGTTGGAGAATCCATTGGTTCCAGCAATGTAAGATCCAGTTCCAC 217158 Query 80198 GAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 80255 |||| || | ||| ||||| ||||| ||||| | || ||||| | || || || Sbjct 217157 GAATGTTGTGGACGTTG--AGACCGATTCCACCTGCAGTCTTGGAGATCATGGCACA-CG 217101 Query 80256 T-TTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGC 80314 | || | || || ||||| || || ||| || || ||||| | | | |||||| Sbjct 217100 TCTTGAGAGTGTCGTAGATTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAAACAGG 217041 Query 80315 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 80374 ||||||||| | || |||||| || || || | || ||||||||||| || || Sbjct 217040 AAGACATTTGAGAATGAGGAGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGGGTGAAAG 216981 Query 80375 ATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTC 80434 || || |||| || || || ||||| || || ||| | || | ||| |||| Sbjct 216980 TCTTCTCGGACATGAGGTTATAAGTCTCGATGGCCTTTTCGACGTCGGTTCCATGGATTC 216921 Query 80435 CTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 80494 | | ||||||||||| | |||||| ||||| | ||| ||| ||| ||| ||| | Sbjct 216920 CAATGGCGACACGCATGAGCATGTGTTGAGGACGTTCGGCGACCTTTCCATTGATTCGTA 216861 Query 80495 ACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 80534 | ||||||| | || | ||| || ||||| || |||| Sbjct 216860 GAAGGTAAGATCTCTCAAGAGTCTTGAAACCGAAGAAGTT 216821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268234363320