Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq28 315 1e-80 >seq28 Length=226377 Score = 315 bits (348), Expect = 1e-80 Identities = 1143/1774 (64%), Gaps = 39/1774 (2%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTG--GAATAGCTAGGATCGGCTATGTGAAT 70925 |||| ||||| || ||||| || |||| ||| || ||||| ||| || || || Sbjct 218579 TCCAACCGTAGAAGTGCATTGAAGTAAGTTGACCGAA-AG-TAGGAGCGGATAGATGGAT 218522 Query 70926 ATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGT 70985 |||| || ||| |||| ||||| || || || || |||||||| | ||||| | Sbjct 218521 GTTCAAAGATTGAGATTGACAAATGAAAGCACCTCTATCAGCAGCCATATCGATGATAGA 218462 Query 70986 CTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT-TCTGGAA-GGTTT 71043 ||| || ||||||||||||| ||| || || | ||| || ||| ||||||| | Sbjct 218461 CTTCTGAGGAATTTCCCAAACAGTCTTGTATAAAGCCTTGAT-TCTATCTGGAATTCCTG 218403 Query 71044 GTA--TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATA 71101 ||| || ||||| |||||||||| || || ||||| || || ||| ||||| ||||| Sbjct 218402 GTACGTTTTGAATCGATCCACCATGAGCGATGATCCTGTTCTTCATCGATTCATCCCATA 218343 Query 71102 ATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACA 71161 | | ||| || |||| | | |||||| || ||||| |||||||||| || Sbjct 218342 AACCTTGTTCGACCAATTCTCTCAACAACCAAGGATTGACGACTTGGAATTCTCCAGCCA 218283 Query 71162 ATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAA 71221 | |||||||||| ||| || || || || ||||| | | || || ||||| | Sbjct 218282 AGACTCTACGAGAGTAGATGTTTGAAGTGTAAGGTTCGAAGCATTCGTTGAAACCCAAGA 218223 Query 71222 TTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTG 71281 |||||| ||| || ||||| ||||| || || | | ||| || | ||||||||| Sbjct 218222 TTTGAGAAGTAGAGGCAGTTGGCATTGGAGCTAGAAGAAGAGAGTTACGTAGACCATGTT 218163 Query 71282 ATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNN 71341 | || || | || | || ||||| ||||||||| || || || Sbjct 218162 TTGCCATCTTTGCCTTCAATGAAGTCCAATCCCAAAGATCTGAAGGAGTGACACCCCACA 218103 Query 71342 NNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTT 71401 || | ||| || ||| | || ||| ||| ||||||| Sbjct 218102 TGTCGTATTGAAGTTCTCCTTGACTTGCTGGACTTCCCTCGTAAGTAGAGTAAGGTCCTT 218043 Query 71402 CTTTTTCGGCTAGTTC-ACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATC 71460 | |||| |||| ||| | || || || || | | ||| ||||||||||| || Sbjct 218042 CGATTTCAGCTAATTCGATCGAACG-TTCCAAAGCGGCGTGATAGATGGTTTCGAAGATT 217984 Query 71461 TTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCG 71520 | ||||| | | ||||| || || || |||||| | || || || || Sbjct 217983 TGGACGTTGAGCTTACGAGCTTCTGGAGAGTCGAAAGGATAACCCATGATCATGAAAGCA 217924 Query 71521 TCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCT 71580 || |||| |||||||| || || ||||| || | || | || ||| |||| Sbjct 217923 TCAGCTAGACCTTGAACACCGATTCCGATTGGACGATGACGGAAGTTGGAACGACGAGCT 217864 Query 71581 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTG 71640 || | ||| || || || || || || || || ||||| |||| || || ||| Sbjct 217863 TCCTCGACAGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTCCACAAATGACCTTG 217804 Query 71641 ACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATTACAAACA----CGTTCAA 71696 | |||| | |||| || || || | | || | || || | || Sbjct 217803 GAGA---CCTT---GTGGAGACGTTCGAA-GTCGTAGGTCTTGGTAGCAGCGTCGATGAA 217751 Query 71697 G---GCAACAG------ATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTG 71747 | | || || | |||| || || |||||||| |||| | | | |||| Sbjct 217750 GGTTGGAAGAGCGATGGAAGCCAAGTTGCAGACGGCTACTTCATCCGGAGCACTGTATTC 217691 Query 71748 TATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTT 71807 || |||||||| ||||| || |||||||||||||||| || | || |||||||| Sbjct 217690 GATGATTTCAGTACAAAGGTTTGAGCACTTGATGGTTCCTAGGTTCTTCTGGTTACTCTT 217631 Query 71808 TTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTAT 71867 | |||| || ||||| ||||| || | ||| | |||||||| | |||| ||| | Sbjct 217630 TCTGTTTGCAGCGTCCTTGTAAAGCATGTAAGGATTTCCAGTTTCGGTTTGAGCTTCCAA 217571 Query 71868 AATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTA 71927 || || | ||| | | |||| || | | ||||| ||| ||| |||||| Sbjct 217570 GATGGCATACCAAAGCTTTTGAGCTTTGACGGTTCTCTTGGCTCTACCTTCGGATTCGTA 217511 Query 71928 TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATT 71987 | || || | |||||| || ||||| | | | | | || || ||||| Sbjct 217510 CTTGGTGTAAAGAGCTTCGAATTCCTCTCCGTAGACGTCAGCGAGACCTGGGCATTCTCC 217451 Query 71988 CGGACACATCAATGACCACT-CTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAA 72046 ||||| | | ||||| | ||| || || | ||||| ||||| ||||| || |||| Sbjct 217450 AGGACAAAGTAGAGACCAATCCTCGTTCTTC-TCTACTCTCTTCATGAAGAGGTCTGGAA 217392 Query 72047 TCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAA 72106 |||||||||| || || ||||||| | | ||||| ||||| ||||| | Sbjct 217391 TCCAAAGAGCGTAGAACAGTTCTCTGGCACGAACTTCCTCCTTTCCGTGGTTCTTACGTA 217332 Query 72107 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 72166 |||| | ||| | | | || |||||||| || |||||||| ||||| | | || | Sbjct 217331 GATCCAAGAATTCGAAGACGTCTGAATGCCATGGCTCCAAGTAGATGGCAAAGGCACCTG 217272 Query 72167 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 72226 | || ||||||||||| ||||| | ||||||||| ||||| || || || | | ||| | Sbjct 217271 GACGCTTGTTTCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGTAGACACGTAGCATGG 217212 Query 72227 GAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT 72286 ||| ||||| ||||| |||||||| || | || || |||| | ||||||| | Sbjct 217211 GAACGATACCGTTGGAGAATCCATTGGTTCCAGCAATGTAAGATCCAGTTCCACGAATGT 217152 Query 72287 TGCTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTA 72343 || | ||| ||||| ||||| ||||| | || ||||| | || || ||| || | Sbjct 217151 TGTGGACGTTG--AGACCGATTCCACCTGCAGTCTTGGAGATCATGGCACA-CGTCTTGA 217095 Query 72344 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA 72403 || || ||||| || || || || ||| ||||| | | | |||||| ||||| Sbjct 217094 GAGTGTCGTAGATTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAAACAGGAAGACA 217035 Query 72404 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 72463 |||| | || |||||| || || || | || ||||||||||| || || || | Sbjct 217034 TTTGAGAATGAGGAGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGGGTGAAAGTCTTCT 216975 Query 72464 CAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCG 72523 | |||| || || || ||||| || || ||| | || | ||| ||||| | | Sbjct 216974 CGGACATGAGGTTATAAGTCTCGATGGCCTTTTCGACGTCGGTTCCATGGATTCCAATGG 216915 Query 72524 CGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGT 72583 |||||||||| | ||| || ||||| | ||| ||| ||| ||| ||| | | || Sbjct 216914 CGACACGCATGAGCATGTGTTGAGGACGTTCGGCGACCTTTCCATTGATTCGTAGAAGGT 216855 Query 72584 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 72617 | ||| | || | ||| || ||||| || |||| Sbjct 216854 AAGATCTCTCAAGAGTCTTGAAACCGAAGAAGTT 216821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138671477880