Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq23 122 1e-22 seq28 87.8 3e-12 >seq23 Length=563827 Score = 122 bits (134), Expect = 1e-22 Identities = 184/255 (72%), Gaps = 5/255 (2%) Strand=Plus/Minus Query 125010 TATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAG 125069 |||| | | || ||| |||||||||| || || | || || || ||||| | || ||| Sbjct 140220 TATCTTTAGATCTGGCAAATGTACAAGAAAGCAGAAGCATCATTCTGGACTGCAGAGGAG 140161 Query 125070 GTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG 125129 | ||||| ||||| ||| || |||||||||| | |||| ||| | ||| || | Sbjct 140160 ATTGATCTCTCCAAAGACATGCACGATTGGGACAACAAGTTGAATGACAATGAACGTCAC 140101 Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG 125189 ||||| || ||| | |||||||||||||||| || |||||||||||||| || || || Sbjct 140100 TTTATCTCTCACGTCTTGGCCTTCTTTGCCGCTTCGGATGGAATCGTCAATGAAAACCTT 140041 Query 125190 TTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCC 125247 ||| ||| ||| | | |||| | | |||||| ||| || || || || |||| Sbjct 140040 TTGGAACGTTTCAGTGGTGAAGTTCA-AGCTGCAGAGG-CTCGTTGTTTCTATGGGTTCC 139983 Query 125248 AAATCATGAT-TGAG 125261 | |||||||| |||| Sbjct 139982 AGATCATGATGTGAG 139968 >seq28 Length=226377 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 ||||||||||| ||||| ||||| ||| | | |||||||||||||| || |||||| Sbjct 218432 TACAAGACTGTTTGGGAAATTCCTCAGAAGTCTATCATCGATATGGCTGCTGATAGAGGT 218491 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | | |||| || |||||| || || | | | ||| || || | | ||| Sbjct 218492 GCTTTCATTTGTCAATCTCAATCTTTGAACATCCATCTATCCGCTCCTACTTTCGGTCAA 218551 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTG 98219 | ||||| || ||||| |||| ||||| ||||| | ||||| || | |||||| || Sbjct 218552 CTTACTTCAATGCACTTCTACGGTTGGAAGAAGGGTTTGAAGACTGGAACTTACTATTTG 218611 Query 98220 AGAACAAAGTCGGCCACCAATGC 98242 ||||| | | || ||||||| Sbjct 218612 AGAACTAGACCTGCAGCCAATGC 218634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058616415880