Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq4 159 3e-34 seq15 125 5e-24 seq1 105 5e-18 >seq4 Length=1327562 Score = 159 bits (176), Expect = 3e-34 Identities = 164/212 (77%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||||||||| || ||||| |||||||||||||| | | |||| ||||||| Sbjct 1257747 AACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCTCAAAGTTCTACCGTCTTC 1257806 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||||| ||||| | || | ||||||||| || ||||||||| || ||||| Sbjct 1257807 CAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCCTCCTTGTCTTG 1257866 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| ||||| ||| || | || || ||||| ||| ||| || || || ||||| || | Sbjct 1257867 AATCTTTGC-CTTAACGTTATCAATAGTATCACTAGATTCGACTTCCAAAGTAATAGTCT 1257925 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || |||| ||| || || |||||||||||| Sbjct 1257926 TTCCGGTCAAAGTCTTGACGAAAATTTGCATA 1257957 Score = 127 bits (140), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAA--TTCTCGCG 15208 ||| || || ||||| || || || ||||| |||||||| || | | || |||| || Sbjct 1257972 TAAGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTC--TGACAAGGTTCTACCG 1258029 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||||||||| || || ||| | ||||| | |||||| ||| ||| |||||||| ||| Sbjct 1258030 TCTTCTAATTGCTTTCCTGCGAAAATCAATCTTTGTTGATCGGGTGGGATTCCTTCCTTG 1258089 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || ||||||| || || | || |||||||| | | ||| || || | || ||| Sbjct 1258090 TCCTGAATTTTGGCTTTGACGTTGTCGATGGTATCTCCAGATTCGACTTCGAGAGTGATG 1258149 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||||| || || ||||| ||||||||| Sbjct 1258150 GTCTTTCCTGTCAAGGTCTTGACAAAGATTTGCATA 1258185 Score = 96.9 bits (106), Expect = 3e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 15179 TGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAA 15238 || |||||||| || || |||| ||||||| ||||| || || ||| | ||||| Sbjct 1258530 TGGATGTTGTAGTCTGAGAGGGTTCTTCCGTCTTCCAATTGCTTACCGGCGAAGATCAAT 1258589 Query 15239 CGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATG 15298 | |||||||| |||||| ||||||||||| ||||| ||| ||| | || ||| Sbjct 1258590 CTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTGTCAATG 1258649 Query 15299 GTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATT 15358 || || | | ||||| |||| || || || || || || ||||| ||||| || || Sbjct 1258650 GTGTCTCCAGACTCTACCTCTAGAGTGATAGTCTTTCCGGTAAGAGTCTTTACGAAGATC 1258709 Query 15359 TGCATA 15364 |||||| Sbjct 1258710 TGCATA 1258715 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/201 (70%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 15179 TGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAA 15238 || |||||||| || ||| |||| | ||||| | ||| || ||||| | || | | Sbjct 1259031 TGGATGTTGTAGTCTGAAAGAGTTCTACCATCTTCCAGTTGCTTTCCAGCAAAGATGAGA 1259090 Query 15239 CGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTAT 15297 ||||||||||| || || ||||| || || ||| ||||| |||||| | || || Sbjct 1259091 CGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTGC-CTTTACGTTGTCGAT 1259149 Query 15298 GGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAAT 15357 ||| || | | ||| || || | || ||||| || || || | |||||| || || || Sbjct 1259150 GGTGTCACCAGATTCCACTTCGAGAGTGATGGTCTTTCCAGTTAAAGTTTTGACGAAGAT 1259209 Query 15358 TTGCATATTTGAAAATAAAAT 15378 |||| || |||||| | ||| Sbjct 1259210 TTGC--ATCTGAAAAGAGAAT 1259228 >seq15 Length=848729 Score = 125 bits (138), Expect = 5e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || ||||| || || || || ||||||||||| ||| |||| ||||||| Sbjct 552193 ACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGCTCAGAGTTCTACCGTCTTCC 552134 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || ||||| ||||| | ||||| | |||||||||| || |||||||| ||||| Sbjct 552133 AACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCTTGG 552074 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || ||||| || | ||| || |||| ||| || || ||| Sbjct 552073 ATCTTGGCCTTGACATTGTCAATGGTGTCACCGGATTCGACCTCTAGGGTGATCGTCTTA 552014 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGC 15361 || |||| || || || ||||||||| Sbjct 552013 CCGGTCAAGGTCTTGACGAAAATTTGC 551987 >seq1 Length=2409711 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| || || || ||||| ||||||||||| || |||| | ||||| Sbjct 336345 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTTCCATCTTCC 336404 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || ||||| | || || | |||||| || |||||||||||| ||||| Sbjct 336405 AATTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGG 336464 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| | || || || || | | || || || | ||| || || ||| Sbjct 336465 ATTTTGGCCTTGACATTGTCGATAGTGTCACCAGACTCAACCTCGAGGGTGATAGTCTTA 336524 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATAT 15365 || || | || || || ||||||||| ||| Sbjct 336525 CCCGTTAAGGTCTTAACGAAAATTTGCCTAT 336555 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | || || ||||| || ||||| || ||||| |||||||| || | Sbjct 640267 CCACCTCTAAGACGTAGGACCAAATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGAT 640326 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| ||||||||| ||| || || || | || | |||||||| ||| |||| Sbjct 640327 AAGGTTCTACCGTCTTCTAGTTGCTTTCCGGCAAAGATGAGTCGTTGTTGATCGGGTGGA 640386 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAAT 15291 || ||||||||||| ||| ||| ||| || || Sbjct 640387 ATACCTTCTTTGTCTTGAATCTTGGCCTTGACTAT 640421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178921914283