Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq23 158 3e-33 seq4 150 4e-31 seq15 134 3e-26 seq1 134 3e-26 >seq23 Length=563827 Score = 158 bits (174), Expect = 3e-33 Identities = 311/456 (68%), Gaps = 8/456 (2%) Strand=Plus/Minus Query 269087 GAATGGGCTCTGAAATGGATAAACGATAGC---GCGCCTTACGGAGAAAGGTTAGTTGCT 269143 ||||||||| | | |||||| || || | | || | | | ||||| ||||| ||| Sbjct 139623 GAATGGGCTTTAAGATGGATCAATGACACCAAAGCAACCTTTGCTGAAAGATTAGTAGCT 139564 Query 269144 TTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAG 269203 || || || || |||||||| || || || || |||||||| | ||||| ||| | ||| Sbjct 139563 TTCGCTGCCGTCGAAGGTATCTTTTTCTCTGGATCTTTTGCTTCAATCTTCTGGATCAAG 139504 Query 269204 AAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGT 269263 || ||||| | |||||||| || ||||| |||||||||||||| || || |||||| Sbjct 139503 AAGAGAGGTTTAATGCCAGGTTTGACTTTTTCTAACGAATTGATTTCAAGAGATGAAGGT 139444 Query 269264 TTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAA 269323 ||||| ||| ||||||||||||||||| || ||| | | | | || || | Sbjct 139443 TTACATACCGATTTCGCTTGTTTATTATTCTCTCATT---TAAAGAAGAGAGCTCATCCA 139387 Query 269324 GATAGAGTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTC-TAACGGA 269382 |||| || | | || || | ||||||| | | ||||| |||| | | || Sbjct 139386 GATACGGTTTTGGCTATCATTACTGAAGCTGTTGGAATTG-AACAGGCTTTCTTGAGAGA 139328 Query 269383 AGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTT 269442 ||| || || || ||| || || ||||| |||| ||| |||||||| | || Sbjct 139327 CGCTTTACCTTGCGCTCTCATTGGAATGAACGCTAAATTAATGTGTCAATATATTGAATT 139268 Query 269443 CGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAATATAACGTTGAAAATCC 269502 ||| |||||||| | |||| ||| | || | ||| | |||||| | ||||| Sbjct 139267 CGTTGCTGATAGACTTTTGGTCTCTCTTGGTAATGACAAACATTATAACTCTACGAATCC 139208 Query 269503 GTTTAGTTTTATGGAGAATATATCATTAGAAGGTAA 269538 || ||| |||||||| || || ||| | ||||| Sbjct 139207 TTTCGATTTCATGGAGAACATTTCTTTACAGGGTAA 139172 >seq4 Length=1327562 Score = 150 bits (166), Expect = 4e-31 Identities = 145/186 (78%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 104374 CTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAG 104433 ||| || || ||||| || ||||||||||| ||||| ||||| ||||||||||| || || Sbjct 1259030 CTGGATGTTGTAGTCTGAAAGAGTTCTACCATCTTCCAGTTGCTTTCCAGCAAAGATGAG 1259089 Query 104434 CCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTAC 104493 | ||||| |||||||| || ||||| ||||| ||||||||||| ||||| || || | Sbjct 1259090 ACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTGCCTTTACGTTGTCGAT 1259149 Query 104494 GGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553 ||| || | || ||| || || || || || ||||| ||||| | ||||| || || || Sbjct 1259150 GGTGTCACCAGATTCCACTTCGAGAGTGATGGTCTTTCCAGTTAAAGTTTTGACGAAGAT 1259209 Query 104554 CTGCAT 104559 ||||| Sbjct 1259210 TTGCAT 1259215 Score = 147 bits (162), Expect = 5e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || | ||| | ||| || | ||| | || ||||| || ||||| || || || Sbjct 1257728 TTCCACCACGTAGACGAAGAACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGC 1257787 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | ||||||||||||||| | ||||||||||||||| || || | ||||||||||| | Sbjct 1257788 TCAAAGTTCTACCGTCTTCCAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTG 1257847 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | ||||| || || || ||||||||||| || || || || | ||||| |||| ||| | Sbjct 1257848 GAATTCCCTCCTTGTCTTGAATCTTTGCCTTAACGTTATCAATAGTATCACTAGATTCGA 1257907 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || | ||||||||||| || || | || || || || || ||||| Sbjct 1257908 CTTCCAAAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 1257956 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || ||||| || | |||||||||||||||| ||| ||||| Sbjct 1257988 GTCGATTCCTTTTGGATGTTGTAGTCTGACAAGGTTCTACCGTCTTCTAATTGCTTTCCT 1258047 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | || |||||||| || || |||||||| || |||||||| || ||||| Sbjct 1258048 GCGAAAATCAATCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTG 1258107 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| | || ||| || || || || || ||||| || || | || Sbjct 1258108 ACGTTGTCGATGGTATCTCCAGATTCGACTTCGAGAGTGATGGTCTTTCCTGTCAAGGTC 1258167 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 1258168 TTGACAAAGATTTGCAT 1258184 Score = 138 bits (152), Expect = 3e-27 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 104374 CTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAG 104433 ||| || || ||||| || || ||||| |||||||| | ||| || || || || || | Sbjct 1258529 CTGGATGTTGTAGTCTGAGAGGGTTCTTCCGTCTTCCAATTGCTTACCGGCGAAGATCAA 1258588 Query 104434 CCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTAC 104493 |||||||| ||||| || || |||||||| || || || || || || ||||| || | Sbjct 1258589 TCTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTGTCAAT 1258648 Query 104494 GGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553 ||| || | || ||||||||||| || |||||||| || ||||| || ||||| || || Sbjct 1258649 GGTGTCTCCAGACTCTACCTCTAGAGTGATAGTCTTTCCGGTAAGAGTCTTTACGAAGAT 1258708 Query 104554 CTGCAT 104559 |||||| Sbjct 1258709 CTGCAT 1258714 >seq15 Length=848729 Score = 134 bits (148), Expect = 3e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| ||||| || || ||||||||||||||||| | ||||| ||| Sbjct 552181 GTGGATTCCTTCTGGATATTGTAATCGCTCAGAGTTCTACCGTCTTCCAACTGTTTACCA 552122 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | || ||||| || ||||| |||||||| || || || ||||| || || Sbjct 552121 GCAAAGATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTG 552062 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || | | ||| |||||||| || || |||||||| || | || Sbjct 552061 ACATTGTCAATGGTGTCACCGGATTCGACCTCTAGGGTGATCGTCTTACCGGTCAAGGTC 552002 Query 104543 TTTACAAATATCTGCATTT 104561 || || || || ||| ||| Sbjct 552001 TTGACGAAAATTTGCCTTT 551983 >seq1 Length=2409711 Score = 134 bits (148), Expect = 3e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 104341 TAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCT 104400 || || |||||| | ||| | |||||||| || ||||| || || || || || ||||| Sbjct 336335 TAACCGAAGTACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCT 336394 Query 104401 ACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTC 104460 || ||||| | ||| ||||||||||| |||| || |||||||| || || |||||||| Sbjct 336395 TCCATCTTCCAATTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTC 336454 Query 104461 TTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT 104520 || || || || || || || ||||| || | || || | || || ||||| || || Sbjct 336455 CTTGTCTTGGATTTTGGCCTTGACATTGTCGATAGTGTCACCAGACTCAACCTCGAGGGT 336514 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 ||||||||||| || | || || || || || ||| Sbjct 336515 GATAGTCTTACCCGTTAAGGTCTTAACGAAAATTTGC 336551 Score = 118 bits (130), Expect = 2e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||| || | || || | ||| | || ||||| || ||||| || ||||| || Sbjct 640266 TCCACCTCTAAGACGTAGGACCAAATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGA 640325 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || |||||||||||||||||||| ||||| ||||| || || | |||||||| || || Sbjct 640326 TAAGGTTCTACCGTCTTCTAGTTGCTTTCCGGCAAAGATGAGTCGTTGTTGATCGGGTGG 640385 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTAC 104484 || |||||||| || |||||||| || || || Sbjct 640386 AATACCTTCTTTGTCTTGAATCTTGGCCTTGAC 640418 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | ||| | ||||| | || | || ||||||||||| || || || ||| Sbjct 640739 ATTCCACCACGTAGACGTAGTACCAAGTGCAGGGTTGATTCTTTCTGGATGTTGTAATCA 640798 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| ||||| || || | ||| ||||||||||| ||||| | |||||||| || Sbjct 640799 GACAGAGTCCTACCATCCTCCAATTGCTTTCCAGCAAAGATTAGACGTTGTTGATCCGGT 640858 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTAC 104484 || |||||||| || || || || || ||||| || Sbjct 640859 GGGATTCCTTCCTTGTCTTGGATTTTGGCTTTGAC 640893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397470605604