Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq15 89.7 6e-13 seq12 87.8 2e-12 >seq15 Length=848729 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 19340 TTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAA 19399 || |||||| ||| || ||||||| | |||||||| || ||||| || ||| ||| Sbjct 663772 TTGAGATCTACTAGAAGACCTGAATTGGGTGATAAATTCTCTTCTAGACATGGTCAGAAA 663713 Query 19400 GGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTG 19459 || |||||| |||| | || ||||||||||||||| |||| | | | ||||| Sbjct 663712 GGTGTTTGTGGTTTGATCTCTCCTCAAGAAGATATGCCCTTTAATGATAAAGGTATCTGT 663653 Query 19460 CCGGATCTTATTATTAACCCACATGCTTTTCC 19491 || ||| | ||||| ||||| |||| ||| || Sbjct 663652 CCTGATATCATTATGAACCCTCATGGTTTCCC 663621 >seq12 Length=1121745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 7063 GGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATA 7122 |||||||||||| |||| | || | ||||||| | || ||| |||| ||| | | | Sbjct 391498 GGATTCCAAGCACTCATAATGATTCTTCTATCAGTAGGGTTTTCCTTTATTTTCCTAACA 391557 Query 7123 ATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTA 7182 | |||||||| | || | || ||||| |||| ||||| ||| ||| Sbjct 391558 CATTCCGCCAATTGATCCACTCCTTTGCCACTATAATCCGTATCACAATCCTCATATTTA 391617 Query 7183 GCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCT 7233 || || |||||||||||||| || ||||||| ||||||||||| |||||| Sbjct 391618 GCACCGAAATGTCTCCATTGGAAACCATAAACTGGACCTAAATCCCCTTCT 391668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871530750800